Hb_004221_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig4221: 6607-9636
Sequence    

Annotation

kegg
ID pop:POPTR_0014s02580g
description hypothetical protein
nr
ID XP_012068313.1
description PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
swissprot
ID Q93VY3
description NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1
trembl
ID R4N5R6
description NAC transcription factor 061 OS=Jatropha curcas GN=JCGZ_16111 PE=4 SV=1
Gene Ontology
ID GO:0003677
description nac domain-containing protein 72-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004221_010 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
2 Hb_158092_070 0.0609780671 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
3 Hb_002762_060 0.0611818858 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
4 Hb_004055_010 0.0659806447 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
5 Hb_001248_050 0.0692506921 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
6 Hb_000032_570 0.0747266811 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
7 Hb_000877_060 0.0765215049 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
8 Hb_003392_040 0.0797193495 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
9 Hb_000169_010 0.080047413 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
10 Hb_000272_100 0.0806572308 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
11 Hb_004920_040 0.0811819483 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
12 Hb_003052_100 0.0813214928 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_004109_200 0.0814445808 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
14 Hb_001811_150 0.0819043003 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like isoform X2 [Jatropha curcas]
15 Hb_001138_050 0.0825319514 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
16 Hb_000720_120 0.0826049653 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
17 Hb_000483_350 0.0832082531 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
18 Hb_133271_020 0.0839829658 - - prohibitin, putative [Ricinus communis]
19 Hb_001030_120 0.0846429271 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
20 Hb_003777_270 0.0848790988 - - 60S ribosomal protein L3B [Hevea brasiliensis]

Gene co-expression network

sample Hb_004221_010 Hb_004221_010 Hb_158092_070 Hb_158092_070 Hb_004221_010--Hb_158092_070 Hb_002762_060 Hb_002762_060 Hb_004221_010--Hb_002762_060 Hb_004055_010 Hb_004055_010 Hb_004221_010--Hb_004055_010 Hb_001248_050 Hb_001248_050 Hb_004221_010--Hb_001248_050 Hb_000032_570 Hb_000032_570 Hb_004221_010--Hb_000032_570 Hb_000877_060 Hb_000877_060 Hb_004221_010--Hb_000877_060 Hb_133271_020 Hb_133271_020 Hb_158092_070--Hb_133271_020 Hb_003052_100 Hb_003052_100 Hb_158092_070--Hb_003052_100 Hb_003392_040 Hb_003392_040 Hb_158092_070--Hb_003392_040 Hb_001030_120 Hb_001030_120 Hb_158092_070--Hb_001030_120 Hb_000975_290 Hb_000975_290 Hb_158092_070--Hb_000975_290 Hb_157854_010 Hb_157854_010 Hb_002762_060--Hb_157854_010 Hb_024835_030 Hb_024835_030 Hb_002762_060--Hb_024835_030 Hb_004920_040 Hb_004920_040 Hb_002762_060--Hb_004920_040 Hb_000720_120 Hb_000720_120 Hb_002762_060--Hb_000720_120 Hb_002762_060--Hb_158092_070 Hb_008959_030 Hb_008959_030 Hb_004055_010--Hb_008959_030 Hb_000483_350 Hb_000483_350 Hb_004055_010--Hb_000483_350 Hb_004109_200 Hb_004109_200 Hb_004055_010--Hb_004109_200 Hb_001655_070 Hb_001655_070 Hb_004055_010--Hb_001655_070 Hb_004055_010--Hb_002762_060 Hb_001248_050--Hb_000877_060 Hb_000085_270 Hb_000085_270 Hb_001248_050--Hb_000085_270 Hb_001138_050 Hb_001138_050 Hb_001248_050--Hb_001138_050 Hb_001248_050--Hb_004109_200 Hb_001248_050--Hb_000483_350 Hb_000032_570--Hb_003392_040 Hb_000032_570--Hb_001030_120 Hb_028872_140 Hb_028872_140 Hb_000032_570--Hb_028872_140 Hb_000169_010 Hb_000169_010 Hb_000032_570--Hb_000169_010 Hb_003728_020 Hb_003728_020 Hb_000032_570--Hb_003728_020 Hb_006692_030 Hb_006692_030 Hb_000032_570--Hb_006692_030 Hb_012022_030 Hb_012022_030 Hb_000877_060--Hb_012022_030 Hb_011828_020 Hb_011828_020 Hb_000877_060--Hb_011828_020 Hb_000877_060--Hb_000720_120 Hb_000877_060--Hb_002762_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.634 1.87871 0.585623 1.18443 2.98326 4.30201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.81616 3.42322 2.76198 1.99082 0.588183

CAGE analysis