Hb_004221_020

Information

Type -
Description -
Location Contig4221: 15058-20986
Sequence    

Annotation

kegg
ID rcu:RCOM_1589660
description protein binding protein, putative
nr
ID XP_002510189.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q7XTV7
description Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica GN=HIP1 PE=1 SV=2
trembl
ID B9R796
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1589660 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable e3 ubiquitin-protein ligase hip1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41744: 15149-20966 , PASA_asmbl_41745: 15149-20964 , PASA_asmbl_41746: 15486-15627 , PASA_asmbl_41747: 18506-19998
cDNA
(Sanger)
(ID:Location)		 033_C03.ab1: 15149-17335

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004221_020 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_002835_370 0.0458677609 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
3 Hb_010139_040 0.0464480349 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000289_060 0.0494363287 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
5 Hb_000165_250 0.0529914479 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
6 Hb_000072_220 0.054001299 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
7 Hb_002025_020 0.0572127666 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
8 Hb_000029_050 0.0582514319 - - expressed protein, putative [Ricinus communis]
9 Hb_001248_060 0.0594321337 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010618_010 0.0609115687 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
11 Hb_000152_380 0.0609723926 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
12 Hb_001493_030 0.0638139559 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
13 Hb_000453_170 0.0654267765 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_044728_010 0.0675614797 - - -
15 Hb_000879_200 0.068574033 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
16 Hb_000010_330 0.0709166237 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
17 Hb_001409_020 0.071006188 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
18 Hb_007416_180 0.071237866 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
19 Hb_000502_050 0.0715424607 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
20 Hb_001595_030 0.0721704195 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004221_020 Hb_004221_020 Hb_002835_370 Hb_002835_370 Hb_004221_020--Hb_002835_370 Hb_010139_040 Hb_010139_040 Hb_004221_020--Hb_010139_040 Hb_000289_060 Hb_000289_060 Hb_004221_020--Hb_000289_060 Hb_000165_250 Hb_000165_250 Hb_004221_020--Hb_000165_250 Hb_000072_220 Hb_000072_220 Hb_004221_020--Hb_000072_220 Hb_002025_020 Hb_002025_020 Hb_004221_020--Hb_002025_020 Hb_002835_370--Hb_002025_020 Hb_002835_370--Hb_000072_220 Hb_001680_010 Hb_001680_010 Hb_002835_370--Hb_001680_010 Hb_009548_020 Hb_009548_020 Hb_002835_370--Hb_009548_020 Hb_028089_010 Hb_028089_010 Hb_002835_370--Hb_028089_010 Hb_010139_040--Hb_000072_220 Hb_010457_030 Hb_010457_030 Hb_010139_040--Hb_010457_030 Hb_048937_040 Hb_048937_040 Hb_010139_040--Hb_048937_040 Hb_003728_080 Hb_003728_080 Hb_010139_040--Hb_003728_080 Hb_010139_040--Hb_002835_370 Hb_001248_060 Hb_001248_060 Hb_000289_060--Hb_001248_060 Hb_000538_270 Hb_000538_270 Hb_000289_060--Hb_000538_270 Hb_002686_030 Hb_002686_030 Hb_000289_060--Hb_002686_030 Hb_010618_010 Hb_010618_010 Hb_000289_060--Hb_010618_010 Hb_077562_050 Hb_077562_050 Hb_000289_060--Hb_077562_050 Hb_000029_050 Hb_000029_050 Hb_000165_250--Hb_000029_050 Hb_006649_050 Hb_006649_050 Hb_000165_250--Hb_006649_050 Hb_017358_030 Hb_017358_030 Hb_000165_250--Hb_017358_030 Hb_005496_130 Hb_005496_130 Hb_000165_250--Hb_005496_130 Hb_000291_050 Hb_000291_050 Hb_000165_250--Hb_000291_050 Hb_172632_080 Hb_172632_080 Hb_000072_220--Hb_172632_080 Hb_000072_220--Hb_009548_020 Hb_001675_180 Hb_001675_180 Hb_000072_220--Hb_001675_180 Hb_000347_070 Hb_000347_070 Hb_002025_020--Hb_000347_070 Hb_009545_100 Hb_009545_100 Hb_002025_020--Hb_009545_100 Hb_003158_010 Hb_003158_010 Hb_002025_020--Hb_003158_010 Hb_000780_230 Hb_000780_230 Hb_002025_020--Hb_000780_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.8227 35.2804 27.1869 27.337 52.2445 52.5247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.8895 43.8066 54.3097 33.3487 32.1236

CAGE analysis