Hb_004221_030

Information

Type transcription factor
Description TF Family: bHLH
Location Contig4221: 22412-25716
Sequence    

Annotation

kegg
ID rcu:RCOM_1589670
description hypothetical protein
nr
ID XP_012068320.1
description PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FUA4
description Transcription factor SPATULA OS=Arabidopsis thaliana GN=SPT PE=1 SV=1
trembl
ID A0A067KZV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16113 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor spatula-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41748: 22456-22997 , PASA_asmbl_41749: 22456-25513
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004221_030 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
2 Hb_084230_010 0.1181081113 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
3 Hb_002027_320 0.1191862124 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
4 Hb_002783_220 0.122431726 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]
5 Hb_160256_010 0.1273801402 - - -
6 Hb_030545_010 0.1313392509 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
7 Hb_003874_010 0.1315588055 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
8 Hb_011381_040 0.1327238654 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
9 Hb_000364_170 0.1336403737 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
10 Hb_004013_030 0.146507122 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
11 Hb_000984_220 0.1470037764 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
12 Hb_000392_450 0.1473722919 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
13 Hb_000438_130 0.1488906285 - - uroporphyrinogen decarboxylase, putative [Ricinus communis]
14 Hb_006816_190 0.1499810632 - - calreticulin family protein [Populus trichocarpa]
15 Hb_002284_210 0.1510860083 - - PREDICTED: protein canopy-1 [Jatropha curcas]
16 Hb_000103_120 0.1517856226 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
17 Hb_000905_120 0.1522584293 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
18 Hb_000526_010 0.1569373251 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
19 Hb_007263_010 0.1576229008 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
20 Hb_003160_070 0.1576690803 - - PREDICTED: VIN3-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004221_030 Hb_004221_030 Hb_084230_010 Hb_084230_010 Hb_004221_030--Hb_084230_010 Hb_002027_320 Hb_002027_320 Hb_004221_030--Hb_002027_320 Hb_002783_220 Hb_002783_220 Hb_004221_030--Hb_002783_220 Hb_160256_010 Hb_160256_010 Hb_004221_030--Hb_160256_010 Hb_030545_010 Hb_030545_010 Hb_004221_030--Hb_030545_010 Hb_003874_010 Hb_003874_010 Hb_004221_030--Hb_003874_010 Hb_000984_220 Hb_000984_220 Hb_084230_010--Hb_000984_220 Hb_000500_350 Hb_000500_350 Hb_084230_010--Hb_000500_350 Hb_000800_020 Hb_000800_020 Hb_084230_010--Hb_000800_020 Hb_000905_120 Hb_000905_120 Hb_084230_010--Hb_000905_120 Hb_011381_040 Hb_011381_040 Hb_084230_010--Hb_011381_040 Hb_007263_010 Hb_007263_010 Hb_002027_320--Hb_007263_010 Hb_000392_450 Hb_000392_450 Hb_002027_320--Hb_000392_450 Hb_004994_080 Hb_004994_080 Hb_002027_320--Hb_004994_080 Hb_011386_050 Hb_011386_050 Hb_002027_320--Hb_011386_050 Hb_002027_320--Hb_011381_040 Hb_000181_060 Hb_000181_060 Hb_002027_320--Hb_000181_060 Hb_006775_120 Hb_006775_120 Hb_002783_220--Hb_006775_120 Hb_000364_170 Hb_000364_170 Hb_002783_220--Hb_000364_170 Hb_000000_330 Hb_000000_330 Hb_002783_220--Hb_000000_330 Hb_005333_060 Hb_005333_060 Hb_002783_220--Hb_005333_060 Hb_019654_050 Hb_019654_050 Hb_002783_220--Hb_019654_050 Hb_000987_040 Hb_000987_040 Hb_002783_220--Hb_000987_040 Hb_001195_640 Hb_001195_640 Hb_160256_010--Hb_001195_640 Hb_000920_010 Hb_000920_010 Hb_160256_010--Hb_000920_010 Hb_160256_010--Hb_000181_060 Hb_002284_210 Hb_002284_210 Hb_160256_010--Hb_002284_210 Hb_160256_010--Hb_030545_010 Hb_000140_440 Hb_000140_440 Hb_160256_010--Hb_000140_440 Hb_030545_010--Hb_000140_440 Hb_030545_010--Hb_003874_010 Hb_030545_010--Hb_007263_010 Hb_006555_040 Hb_006555_040 Hb_030545_010--Hb_006555_040 Hb_003874_010--Hb_000392_450 Hb_003430_040 Hb_003430_040 Hb_003874_010--Hb_003430_040 Hb_003874_010--Hb_002027_320 Hb_003874_010--Hb_007263_010 Hb_004517_030 Hb_004517_030 Hb_003874_010--Hb_004517_030 Hb_000300_710 Hb_000300_710 Hb_003874_010--Hb_000300_710
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.791019 0.33469 6.0035 2.62956 0.961828 1.20036
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.678199 0.859536 0.774281 0.664159 1.41553

CAGE analysis