Hb_004221_050

Information

Type -
Description -
Location Contig4221: 47936-51223
Sequence    

Annotation

kegg
ID rcu:RCOM_1589790
description Serine/threonine-protein kinase PBS1, putative (EC:2.7.11.25)
nr
ID XP_012068323.1
description PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
swissprot
ID Q3EDL4
description Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2
trembl
ID A0A067L3F4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16115 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase at1g01540

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41750: 48213-51271 , PASA_asmbl_41751: 49389-49505
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004221_050 0.0 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
2 Hb_012654_010 0.0931306059 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
3 Hb_002701_080 0.0988782183 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Jatropha curcas]
4 Hb_000078_130 0.0990805476 - - -
5 Hb_005214_160 0.1004322927 - - PREDICTED: heat shock 70 kDa protein, mitochondrial [Jatropha curcas]
6 Hb_000107_100 0.101106814 - - hypothetical protein JCGZ_16208 [Jatropha curcas]
7 Hb_001057_010 0.1059873719 - - cation-transporting atpase plant, putative [Ricinus communis]
8 Hb_000556_020 0.1071536945 - - PREDICTED: terminal uridylyltransferase 7 [Jatropha curcas]
9 Hb_004608_020 0.1074990485 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
10 Hb_000078_100 0.1076673682 - - PREDICTED: topless-related protein 4-like isoform X2 [Jatropha curcas]
11 Hb_002725_070 0.1092076987 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
12 Hb_001140_250 0.1109701111 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
13 Hb_000139_250 0.111496007 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
14 Hb_001504_160 0.1126527989 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
15 Hb_000413_130 0.1142893919 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
16 Hb_003581_140 0.1147116778 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
17 Hb_000659_030 0.1160720247 - - pollen Ole e 1 allergen and extensin family protein, partial [Manihot esculenta]
18 Hb_000012_090 0.1164148104 - - 3'-5' exonuclease, putative [Ricinus communis]
19 Hb_000977_180 0.1169050843 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
20 Hb_002377_050 0.1176110053 - - Agmatine deiminase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004221_050 Hb_004221_050 Hb_012654_010 Hb_012654_010 Hb_004221_050--Hb_012654_010 Hb_002701_080 Hb_002701_080 Hb_004221_050--Hb_002701_080 Hb_000078_130 Hb_000078_130 Hb_004221_050--Hb_000078_130 Hb_005214_160 Hb_005214_160 Hb_004221_050--Hb_005214_160 Hb_000107_100 Hb_000107_100 Hb_004221_050--Hb_000107_100 Hb_001057_010 Hb_001057_010 Hb_004221_050--Hb_001057_010 Hb_001504_160 Hb_001504_160 Hb_012654_010--Hb_001504_160 Hb_012654_010--Hb_000107_100 Hb_000139_250 Hb_000139_250 Hb_012654_010--Hb_000139_250 Hb_012654_010--Hb_001057_010 Hb_012654_010--Hb_005214_160 Hb_012654_010--Hb_002701_080 Hb_011612_010 Hb_011612_010 Hb_002701_080--Hb_011612_010 Hb_000398_190 Hb_000398_190 Hb_002701_080--Hb_000398_190 Hb_002701_080--Hb_001504_160 Hb_009620_040 Hb_009620_040 Hb_002701_080--Hb_009620_040 Hb_000230_330 Hb_000230_330 Hb_002701_080--Hb_000230_330 Hb_003581_140 Hb_003581_140 Hb_000078_130--Hb_003581_140 Hb_001454_060 Hb_001454_060 Hb_000078_130--Hb_001454_060 Hb_002014_080 Hb_002014_080 Hb_000078_130--Hb_002014_080 Hb_000490_030 Hb_000490_030 Hb_000078_130--Hb_000490_030 Hb_000078_130--Hb_000230_330 Hb_006091_030 Hb_006091_030 Hb_000078_130--Hb_006091_030 Hb_000977_180 Hb_000977_180 Hb_005214_160--Hb_000977_180 Hb_005214_160--Hb_009620_040 Hb_007364_010 Hb_007364_010 Hb_005214_160--Hb_007364_010 Hb_004567_100 Hb_004567_100 Hb_005214_160--Hb_004567_100 Hb_002097_090 Hb_002097_090 Hb_005214_160--Hb_002097_090 Hb_000107_100--Hb_001504_160 Hb_017168_010 Hb_017168_010 Hb_000107_100--Hb_017168_010 Hb_000340_510 Hb_000340_510 Hb_000107_100--Hb_000340_510 Hb_001040_170 Hb_001040_170 Hb_000107_100--Hb_001040_170 Hb_001366_040 Hb_001366_040 Hb_000107_100--Hb_001366_040 Hb_001057_010--Hb_000340_510 Hb_005237_010 Hb_005237_010 Hb_001057_010--Hb_005237_010 Hb_001057_010--Hb_017168_010 Hb_003097_190 Hb_003097_190 Hb_001057_010--Hb_003097_190 Hb_002942_220 Hb_002942_220 Hb_001057_010--Hb_002942_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.4467 17.7442 4.14163 9.07665 62.7905 40.0175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.0312 14.157 26.3656 23.0755 5.76736

CAGE analysis