Hb_004223_030

Information

Type -
Description -
Location Contig4223: 12923-18229
Sequence    

Annotation

kegg
ID pop:POPTR_0005s26000g
description POPTRDRAFT_559830; hypothetical protein
nr
ID XP_012073805.1
description PREDICTED: uncharacterized protein LOC105635347 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KPI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08219 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41752: 12257-18337
cDNA
(Sanger)
(ID:Location)		 035_F09.ab1: 12257-12987

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004223_030 0.0 - - PREDICTED: uncharacterized protein LOC105635347 isoform X1 [Jatropha curcas]
2 Hb_000510_290 0.1064080376 - - PREDICTED: protein OSB2, chloroplastic-like isoform X2 [Jatropha curcas]
3 Hb_002184_110 0.1106590554 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 [Jatropha curcas]
4 Hb_003038_240 0.114295525 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000230_500 0.1145805852 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
6 Hb_001247_250 0.1155805318 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
7 Hb_001648_030 0.1167316669 - - PREDICTED: uncharacterized protein LOC105628931 isoform X2 [Jatropha curcas]
8 Hb_000448_050 0.1176549334 - - PREDICTED: ubiquinol oxidase, mitochondrial [Jatropha curcas]
9 Hb_002043_030 0.1186730198 - - hypothetical protein RCOM_1486170 [Ricinus communis]
10 Hb_000059_380 0.1188128133 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
11 Hb_011930_020 0.1188215732 - - PREDICTED: uncharacterized protein LOC105649787 isoform X1 [Jatropha curcas]
12 Hb_004208_030 0.1240474101 transcription factor TF Family: MYB-related PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
13 Hb_000398_100 0.1246024825 - - Uncharacterized protein isoform 2 [Theobroma cacao]
14 Hb_005116_050 0.1264372874 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_000729_030 0.1280392398 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
16 Hb_006478_040 0.1280496011 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
17 Hb_033006_030 0.1282559001 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
18 Hb_092462_020 0.1294787161 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
19 Hb_010068_080 0.1296639414 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
20 Hb_002542_110 0.1297831588 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]

Gene co-expression network

sample Hb_004223_030 Hb_004223_030 Hb_000510_290 Hb_000510_290 Hb_004223_030--Hb_000510_290 Hb_002184_110 Hb_002184_110 Hb_004223_030--Hb_002184_110 Hb_003038_240 Hb_003038_240 Hb_004223_030--Hb_003038_240 Hb_000230_500 Hb_000230_500 Hb_004223_030--Hb_000230_500 Hb_001247_250 Hb_001247_250 Hb_004223_030--Hb_001247_250 Hb_001648_030 Hb_001648_030 Hb_004223_030--Hb_001648_030 Hb_000614_220 Hb_000614_220 Hb_000510_290--Hb_000614_220 Hb_000130_220 Hb_000130_220 Hb_000510_290--Hb_000130_220 Hb_001322_110 Hb_001322_110 Hb_000510_290--Hb_001322_110 Hb_003020_220 Hb_003020_220 Hb_000510_290--Hb_003020_220 Hb_000510_290--Hb_003038_240 Hb_011689_120 Hb_011689_120 Hb_000510_290--Hb_011689_120 Hb_092462_020 Hb_092462_020 Hb_002184_110--Hb_092462_020 Hb_011930_020 Hb_011930_020 Hb_002184_110--Hb_011930_020 Hb_003142_030 Hb_003142_030 Hb_002184_110--Hb_003142_030 Hb_001307_220 Hb_001307_220 Hb_002184_110--Hb_001307_220 Hb_006478_040 Hb_006478_040 Hb_002184_110--Hb_006478_040 Hb_000729_030 Hb_000729_030 Hb_002184_110--Hb_000729_030 Hb_012114_070 Hb_012114_070 Hb_003038_240--Hb_012114_070 Hb_005162_060 Hb_005162_060 Hb_003038_240--Hb_005162_060 Hb_003124_150 Hb_003124_150 Hb_003038_240--Hb_003124_150 Hb_158445_010 Hb_158445_010 Hb_003038_240--Hb_158445_010 Hb_003038_240--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_003038_240--Hb_000336_150 Hb_005188_020 Hb_005188_020 Hb_000230_500--Hb_005188_020 Hb_000041_100 Hb_000041_100 Hb_000230_500--Hb_000041_100 Hb_003371_090 Hb_003371_090 Hb_000230_500--Hb_003371_090 Hb_002988_040 Hb_002988_040 Hb_000230_500--Hb_002988_040 Hb_030565_030 Hb_030565_030 Hb_000230_500--Hb_030565_030 Hb_004208_030 Hb_004208_030 Hb_000230_500--Hb_004208_030 Hb_033006_030 Hb_033006_030 Hb_001247_250--Hb_033006_030 Hb_000172_430 Hb_000172_430 Hb_001247_250--Hb_000172_430 Hb_000201_100 Hb_000201_100 Hb_001247_250--Hb_000201_100 Hb_001247_250--Hb_004208_030 Hb_002234_170 Hb_002234_170 Hb_001247_250--Hb_002234_170 Hb_002073_200 Hb_002073_200 Hb_001247_250--Hb_002073_200 Hb_000398_100 Hb_000398_100 Hb_001648_030--Hb_000398_100 Hb_163256_020 Hb_163256_020 Hb_001648_030--Hb_163256_020 Hb_000448_050 Hb_000448_050 Hb_001648_030--Hb_000448_050 Hb_001648_030--Hb_005162_060 Hb_022318_020 Hb_022318_020 Hb_001648_030--Hb_022318_020 Hb_002534_100 Hb_002534_100 Hb_001648_030--Hb_002534_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5302 27.2102 23.4641 7.91605 13.2456 10.6979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0344 28.4121 23.5165 9.39378 28.4232

CAGE analysis