Hb_004223_040

Information

Type -
Description -
Location Contig4223: 18520-20859
Sequence    

Annotation

kegg
ID fve:101307955
description AP-2 complex subunit sigma-like
nr
ID XP_004291364.1
description PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
swissprot
ID Q84WL9
description AP-2 complex subunit sigma OS=Arabidopsis thaliana GN=AP17 PE=2 SV=1
trembl
ID A0A067KYI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08220 PE=4 SV=1
Gene Ontology
ID GO:0030122
description ap-2 complex subunit sigma

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41753: 18570-20779
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004223_040 0.0 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
2 Hb_011236_010 0.0748124645 - - hypothetical protein JCGZ_17006 [Jatropha curcas]
3 Hb_008921_020 0.0792471601 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
4 Hb_012368_020 0.0863758061 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
5 Hb_007044_130 0.0911922377 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
6 Hb_000735_040 0.0934891864 - - 60S ribosomal protein L32A [Hevea brasiliensis]
7 Hb_000062_650 0.0934919499 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
8 Hb_000975_320 0.0948719731 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
9 Hb_000506_070 0.0964309786 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
10 Hb_000450_130 0.097411363 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
11 Hb_000096_170 0.0976129793 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas]
12 Hb_003641_020 0.0976957518 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
13 Hb_001141_140 0.0978842547 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
14 Hb_000699_090 0.0995468399 - - cyclophilin, putative [Ricinus communis]
15 Hb_009476_020 0.1001466467 - - tryptophan biosynthesis protein, putative [Ricinus communis]
16 Hb_000576_060 0.10074865 - - truncated hemoglobin [Populus tremula x Populus tremuloides]
17 Hb_005063_050 0.1018996259 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
18 Hb_007245_080 0.101951262 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
19 Hb_000906_040 0.1039755284 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
20 Hb_006478_160 0.1042450167 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_004223_040 Hb_004223_040 Hb_011236_010 Hb_011236_010 Hb_004223_040--Hb_011236_010 Hb_008921_020 Hb_008921_020 Hb_004223_040--Hb_008921_020 Hb_012368_020 Hb_012368_020 Hb_004223_040--Hb_012368_020 Hb_007044_130 Hb_007044_130 Hb_004223_040--Hb_007044_130 Hb_000735_040 Hb_000735_040 Hb_004223_040--Hb_000735_040 Hb_000062_650 Hb_000062_650 Hb_004223_040--Hb_000062_650 Hb_003929_150 Hb_003929_150 Hb_011236_010--Hb_003929_150 Hb_000699_090 Hb_000699_090 Hb_011236_010--Hb_000699_090 Hb_006478_160 Hb_006478_160 Hb_011236_010--Hb_006478_160 Hb_001718_030 Hb_001718_030 Hb_011236_010--Hb_001718_030 Hb_000676_310 Hb_000676_310 Hb_011236_010--Hb_000676_310 Hb_005063_050 Hb_005063_050 Hb_008921_020--Hb_005063_050 Hb_000576_060 Hb_000576_060 Hb_008921_020--Hb_000576_060 Hb_008921_020--Hb_000735_040 Hb_008921_020--Hb_000062_650 Hb_000506_070 Hb_000506_070 Hb_008921_020--Hb_000506_070 Hb_001141_140 Hb_001141_140 Hb_008921_020--Hb_001141_140 Hb_003641_020 Hb_003641_020 Hb_012368_020--Hb_003641_020 Hb_000975_320 Hb_000975_320 Hb_012368_020--Hb_000975_320 Hb_005511_160 Hb_005511_160 Hb_012368_020--Hb_005511_160 Hb_001314_100 Hb_001314_100 Hb_012368_020--Hb_001314_100 Hb_012368_020--Hb_000062_650 Hb_134949_020 Hb_134949_020 Hb_012368_020--Hb_134949_020 Hb_002783_270 Hb_002783_270 Hb_007044_130--Hb_002783_270 Hb_007044_130--Hb_001141_140 Hb_000260_550 Hb_000260_550 Hb_007044_130--Hb_000260_550 Hb_007044_130--Hb_000062_650 Hb_003894_070 Hb_003894_070 Hb_007044_130--Hb_003894_070 Hb_006925_040 Hb_006925_040 Hb_007044_130--Hb_006925_040 Hb_174865_010 Hb_174865_010 Hb_000735_040--Hb_174865_010 Hb_000735_040--Hb_000506_070 Hb_000735_040--Hb_001141_140 Hb_000093_110 Hb_000093_110 Hb_000735_040--Hb_000093_110 Hb_003018_020 Hb_003018_020 Hb_000735_040--Hb_003018_020 Hb_000062_650--Hb_000506_070 Hb_000062_650--Hb_003641_020 Hb_000062_650--Hb_000735_040 Hb_002588_010 Hb_002588_010 Hb_000062_650--Hb_002588_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.1153 19.0498 26.5326 35.0663 16.9391 22.5943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.5689 112.399 33.8918 13.9749 11.3577

CAGE analysis