Hb_004223_060

Information

Type -
Description -
Location Contig4223: 33191-34536
Sequence    

Annotation

kegg
ID rcu:RCOM_1597790
description hypothetical protein
nr
ID XP_012073809.1
description PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
swissprot
ID F4I0N3
description WEB family protein At1g75720 OS=Arabidopsis thaliana GN=At1g75720 PE=2 SV=1
trembl
ID A0A067KL03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08222 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004223_060 0.0 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
2 Hb_007904_280 0.0649480762 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
3 Hb_000878_050 0.075737718 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
4 Hb_000077_280 0.0807626134 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_000003_370 0.081800464 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
6 Hb_000103_450 0.0864176348 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
7 Hb_000392_110 0.0875541169 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
8 Hb_005784_010 0.092196567 - - PREDICTED: uncharacterized protein LOC105645175 [Jatropha curcas]
9 Hb_010407_130 0.0940938496 - - hypothetical protein POPTR_0008s16680g [Populus trichocarpa]
10 Hb_009783_010 0.0955342723 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
11 Hb_017383_010 0.0958802116 - - PREDICTED: uncharacterized protein LOC105628176 [Jatropha curcas]
12 Hb_001136_160 0.0962651081 - - catalytic, putative [Ricinus communis]
13 Hb_001545_020 0.09934954 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X5 [Populus euphratica]
14 Hb_004435_020 0.0998312246 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
15 Hb_003376_020 0.1011024607 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_004202_020 0.1022690067 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000032_420 0.1045931613 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
18 Hb_000103_220 0.1057039791 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
19 Hb_000003_280 0.1057192482 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001898_040 0.1058512063 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004223_060 Hb_004223_060 Hb_007904_280 Hb_007904_280 Hb_004223_060--Hb_007904_280 Hb_000878_050 Hb_000878_050 Hb_004223_060--Hb_000878_050 Hb_000077_280 Hb_000077_280 Hb_004223_060--Hb_000077_280 Hb_000003_370 Hb_000003_370 Hb_004223_060--Hb_000003_370 Hb_000103_450 Hb_000103_450 Hb_004223_060--Hb_000103_450 Hb_000392_110 Hb_000392_110 Hb_004223_060--Hb_000392_110 Hb_012132_050 Hb_012132_050 Hb_007904_280--Hb_012132_050 Hb_009783_010 Hb_009783_010 Hb_007904_280--Hb_009783_010 Hb_007904_280--Hb_000878_050 Hb_001136_160 Hb_001136_160 Hb_007904_280--Hb_001136_160 Hb_000012_350 Hb_000012_350 Hb_007904_280--Hb_000012_350 Hb_004435_020 Hb_004435_020 Hb_000878_050--Hb_004435_020 Hb_005542_120 Hb_005542_120 Hb_000878_050--Hb_005542_120 Hb_000878_050--Hb_000392_110 Hb_000003_280 Hb_000003_280 Hb_000878_050--Hb_000003_280 Hb_017383_010 Hb_017383_010 Hb_000077_280--Hb_017383_010 Hb_020738_010 Hb_020738_010 Hb_000077_280--Hb_020738_010 Hb_000032_420 Hb_000032_420 Hb_000077_280--Hb_000032_420 Hb_000077_280--Hb_007904_280 Hb_000103_220 Hb_000103_220 Hb_000077_280--Hb_000103_220 Hb_011618_110 Hb_011618_110 Hb_000003_370--Hb_011618_110 Hb_011853_020 Hb_011853_020 Hb_000003_370--Hb_011853_020 Hb_004202_020 Hb_004202_020 Hb_000003_370--Hb_004202_020 Hb_002636_120 Hb_002636_120 Hb_000003_370--Hb_002636_120 Hb_000003_370--Hb_001136_160 Hb_010407_130 Hb_010407_130 Hb_000103_450--Hb_010407_130 Hb_053264_010 Hb_053264_010 Hb_000103_450--Hb_053264_010 Hb_006846_040 Hb_006846_040 Hb_000103_450--Hb_006846_040 Hb_000103_450--Hb_004435_020 Hb_001047_090 Hb_001047_090 Hb_000103_450--Hb_001047_090 Hb_012653_050 Hb_012653_050 Hb_000103_450--Hb_012653_050 Hb_000392_110--Hb_004202_020 Hb_000483_450 Hb_000483_450 Hb_000392_110--Hb_000483_450 Hb_001117_050 Hb_001117_050 Hb_000392_110--Hb_001117_050 Hb_003894_110 Hb_003894_110 Hb_000392_110--Hb_003894_110 Hb_000392_110--Hb_001047_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0668457 0.965859 6.31109 10.8793 0.117027 0.140802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0535972 0 0.216998 4.51535

CAGE analysis