Hb_004223_090

Information

Type transcription factor
Description TF Family: E2F-DP
Location Contig4223: 45176-52198
Sequence    

Annotation

kegg
ID rcu:RCOM_1597450
description E2F4,5, putative
nr
ID XP_012073814.1
description PREDICTED: transcription factor E2FC isoform X2 [Jatropha curcas]
swissprot
ID Q9FV70
description Transcription factor E2FC OS=Arabidopsis thaliana GN=E2FC PE=1 SV=1
trembl
ID A0A067KXD4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08226 PE=3 SV=1
Gene Ontology
ID GO:0005667
description transcription factor e2fc isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004223_090 0.0 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X2 [Jatropha curcas]
2 Hb_003777_270 0.0579976327 - - 60S ribosomal protein L3B [Hevea brasiliensis]
3 Hb_000923_020 0.0674858707 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
4 Hb_000099_240 0.0697747523 - - 60S ribosomal protein L7a, putative [Ricinus communis]
5 Hb_000057_200 0.0716495402 - - PREDICTED: methyltransferase-like protein 22 [Jatropha curcas]
6 Hb_039946_020 0.0729390731 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003159_080 0.0734451754 - - PREDICTED: uncharacterized protein LOC105639276 [Jatropha curcas]
8 Hb_185830_020 0.0780468498 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_123475_010 0.0792273189 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
10 Hb_033642_010 0.0847720162 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
11 Hb_005539_030 0.0849891308 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
12 Hb_000236_370 0.0851166692 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
13 Hb_003392_040 0.0867305831 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
14 Hb_000032_570 0.0869802486 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
15 Hb_012022_030 0.0871544087 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
16 Hb_000169_010 0.0874139158 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
17 Hb_000720_120 0.0875367177 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
18 Hb_001477_130 0.0884484105 - - PREDICTED: uncharacterized protein LOC105646871 [Jatropha curcas]
19 Hb_000205_160 0.0890513321 - - Peroxisome biogenesis protein 12 [Morus notabilis]
20 Hb_004221_010 0.089609731 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]

Gene co-expression network

sample Hb_004223_090 Hb_004223_090 Hb_003777_270 Hb_003777_270 Hb_004223_090--Hb_003777_270 Hb_000923_020 Hb_000923_020 Hb_004223_090--Hb_000923_020 Hb_000099_240 Hb_000099_240 Hb_004223_090--Hb_000099_240 Hb_000057_200 Hb_000057_200 Hb_004223_090--Hb_000057_200 Hb_039946_020 Hb_039946_020 Hb_004223_090--Hb_039946_020 Hb_003159_080 Hb_003159_080 Hb_004223_090--Hb_003159_080 Hb_033642_010 Hb_033642_010 Hb_003777_270--Hb_033642_010 Hb_003777_270--Hb_000099_240 Hb_009111_050 Hb_009111_050 Hb_003777_270--Hb_009111_050 Hb_000032_570 Hb_000032_570 Hb_003777_270--Hb_000032_570 Hb_133271_020 Hb_133271_020 Hb_003777_270--Hb_133271_020 Hb_003777_330 Hb_003777_330 Hb_000923_020--Hb_003777_330 Hb_000923_020--Hb_000099_240 Hb_002375_020 Hb_002375_020 Hb_000923_020--Hb_002375_020 Hb_001377_290 Hb_001377_290 Hb_000923_020--Hb_001377_290 Hb_000621_080 Hb_000621_080 Hb_000923_020--Hb_000621_080 Hb_007590_010 Hb_007590_010 Hb_000099_240--Hb_007590_010 Hb_001358_030 Hb_001358_030 Hb_000099_240--Hb_001358_030 Hb_001677_210 Hb_001677_210 Hb_000099_240--Hb_001677_210 Hb_185830_020 Hb_185830_020 Hb_000057_200--Hb_185830_020 Hb_000057_200--Hb_039946_020 Hb_000057_200--Hb_033642_010 Hb_005539_030 Hb_005539_030 Hb_000057_200--Hb_005539_030 Hb_002079_010 Hb_002079_010 Hb_000057_200--Hb_002079_010 Hb_012022_030 Hb_012022_030 Hb_039946_020--Hb_012022_030 Hb_000629_010 Hb_000629_010 Hb_039946_020--Hb_000629_010 Hb_000062_240 Hb_000062_240 Hb_039946_020--Hb_000062_240 Hb_003615_010 Hb_003615_010 Hb_039946_020--Hb_003615_010 Hb_002026_180 Hb_002026_180 Hb_039946_020--Hb_002026_180 Hb_003159_080--Hb_005539_030 Hb_015292_030 Hb_015292_030 Hb_003159_080--Hb_015292_030 Hb_000003_160 Hb_000003_160 Hb_003159_080--Hb_000003_160 Hb_003159_080--Hb_039946_020 Hb_000169_010 Hb_000169_010 Hb_003159_080--Hb_000169_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.81909 1.13868 0.556834 0.665208 1.69065 2.62731
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.9906 1.81027 1.34524 1.43411 0.256924

CAGE analysis