Hb_004223_120

Information

Type -
Description -
Location Contig4223: 60341-62101
Sequence    

Annotation

kegg
ID rcu:RCOM_1597430
description hypothetical protein
nr
ID XP_012073817.1
description PREDICTED: protein SPA, chloroplastic [Jatropha curcas]
swissprot
ID K4BVL1
description Protein SPA, chloroplastic OS=Solanum lycopersicum GN=SPA PE=2 SV=1
trembl
ID A0A067KLC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08228 PE=4 SV=1
Gene Ontology
ID GO:0031072
description protein disulfide-isomerase lqy1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41759: 60251-62451 , PASA_asmbl_41760: 61362-61538
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004223_120 0.0 - - PREDICTED: protein SPA, chloroplastic [Jatropha curcas]
2 Hb_000187_100 0.0555317188 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
3 Hb_009293_030 0.0677294584 - - PREDICTED: salicylate carboxymethyltransferase [Jatropha curcas]
4 Hb_030565_020 0.0699570032 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
5 Hb_002259_020 0.0725308285 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
6 Hb_006649_100 0.0750374178 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
7 Hb_001401_050 0.0801026144 - - PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Jatropha curcas]
8 Hb_031862_190 0.0840815207 - - -
9 Hb_003411_070 0.0845060809 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
10 Hb_000084_210 0.0857641401 - - hypothetical protein POPTR_0016s08050g [Populus trichocarpa]
11 Hb_003702_010 0.0883905691 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
12 Hb_005357_210 0.0897456954 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
13 Hb_025048_050 0.0929048718 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
14 Hb_000023_170 0.0933756259 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
15 Hb_000431_080 0.0938669145 - - PREDICTED: uncharacterized protein LOC105632547 [Jatropha curcas]
16 Hb_011512_100 0.0942142922 - - PREDICTED: uncharacterized protein LOC105650382 isoform X1 [Jatropha curcas]
17 Hb_001946_070 0.0946709866 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
18 Hb_000347_170 0.0947241816 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
19 Hb_009189_090 0.0960450805 - - protein phosphatase-2c, putative [Ricinus communis]
20 Hb_001123_340 0.0966033261 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_004223_120 Hb_004223_120 Hb_000187_100 Hb_000187_100 Hb_004223_120--Hb_000187_100 Hb_009293_030 Hb_009293_030 Hb_004223_120--Hb_009293_030 Hb_030565_020 Hb_030565_020 Hb_004223_120--Hb_030565_020 Hb_002259_020 Hb_002259_020 Hb_004223_120--Hb_002259_020 Hb_006649_100 Hb_006649_100 Hb_004223_120--Hb_006649_100 Hb_001401_050 Hb_001401_050 Hb_004223_120--Hb_001401_050 Hb_031862_190 Hb_031862_190 Hb_000187_100--Hb_031862_190 Hb_003411_070 Hb_003411_070 Hb_000187_100--Hb_003411_070 Hb_005365_040 Hb_005365_040 Hb_000187_100--Hb_005365_040 Hb_003702_010 Hb_003702_010 Hb_000187_100--Hb_003702_010 Hb_000431_080 Hb_000431_080 Hb_000187_100--Hb_000431_080 Hb_009293_030--Hb_003411_070 Hb_009293_030--Hb_031862_190 Hb_009846_010 Hb_009846_010 Hb_009293_030--Hb_009846_010 Hb_001329_060 Hb_001329_060 Hb_009293_030--Hb_001329_060 Hb_001946_070 Hb_001946_070 Hb_009293_030--Hb_001946_070 Hb_011716_140 Hb_011716_140 Hb_030565_020--Hb_011716_140 Hb_002253_020 Hb_002253_020 Hb_030565_020--Hb_002253_020 Hb_011512_100 Hb_011512_100 Hb_030565_020--Hb_011512_100 Hb_030565_020--Hb_002259_020 Hb_002078_280 Hb_002078_280 Hb_030565_020--Hb_002078_280 Hb_002259_020--Hb_011512_100 Hb_004627_050 Hb_004627_050 Hb_002259_020--Hb_004627_050 Hb_002259_020--Hb_002078_280 Hb_000847_040 Hb_000847_040 Hb_002259_020--Hb_000847_040 Hb_006649_100--Hb_003411_070 Hb_005375_100 Hb_005375_100 Hb_006649_100--Hb_005375_100 Hb_006649_100--Hb_009293_030 Hb_000173_330 Hb_000173_330 Hb_006649_100--Hb_000173_330 Hb_006649_100--Hb_003702_010 Hb_001401_050--Hb_030565_020 Hb_008032_010 Hb_008032_010 Hb_001401_050--Hb_008032_010 Hb_132840_060 Hb_132840_060 Hb_001401_050--Hb_132840_060 Hb_006355_100 Hb_006355_100 Hb_001401_050--Hb_006355_100 Hb_003729_050 Hb_003729_050 Hb_001401_050--Hb_003729_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.27007 4.54024 292.081 29.0449 0.090617 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.104607 0 0 1.31671 89.6981

CAGE analysis