Hb_004223_150

Information

Type -
Description -
Location Contig4223: 72316-74078
Sequence    

Annotation

kegg
ID rcu:RCOM_1597390
description carboxy-lyase, putative
nr
ID XP_012073820.1
description PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
swissprot
ID Q8L8B8
description Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana GN=LOG3 PE=1 SV=1
trembl
ID A0A067KXD9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08231 PE=4 SV=1
Gene Ontology
ID GO:0016787
description cytokinin riboside 5 -monophosphate phosphoribohydrolase log1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41762: 72320-74103
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004223_150 0.0 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
2 Hb_012395_090 0.0686399715 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
3 Hb_001266_010 0.0757267513 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]
4 Hb_029695_090 0.0762706271 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]
5 Hb_000881_020 0.0765170933 - - hypothetical protein MIMGU_mgv1a022110mg, partial [Erythranthe guttata]
6 Hb_002702_010 0.0786980388 - - carbohydrate binding protein, putative [Ricinus communis]
7 Hb_000608_270 0.0819341697 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012098_100 0.0832811109 - - zinc finger protein, putative [Ricinus communis]
9 Hb_011013_040 0.083987708 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
10 Hb_001942_010 0.0859350356 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
11 Hb_034235_010 0.0890796553 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
12 Hb_004635_120 0.089114431 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
13 Hb_000069_440 0.0945036169 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
14 Hb_000005_060 0.0951946468 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
15 Hb_000042_280 0.0956380203 - - chlorophyll A/B binding protein, putative [Ricinus communis]
16 Hb_003038_230 0.0974119269 - - PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]
17 Hb_001159_050 0.098626104 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
18 Hb_001148_110 0.0989328763 - - -
19 Hb_000020_090 0.0992688385 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
20 Hb_023827_030 0.0999625286 - - PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic-like [Populus euphratica]

Gene co-expression network

sample Hb_004223_150 Hb_004223_150 Hb_012395_090 Hb_012395_090 Hb_004223_150--Hb_012395_090 Hb_001266_010 Hb_001266_010 Hb_004223_150--Hb_001266_010 Hb_029695_090 Hb_029695_090 Hb_004223_150--Hb_029695_090 Hb_000881_020 Hb_000881_020 Hb_004223_150--Hb_000881_020 Hb_002702_010 Hb_002702_010 Hb_004223_150--Hb_002702_010 Hb_000608_270 Hb_000608_270 Hb_004223_150--Hb_000608_270 Hb_011013_040 Hb_011013_040 Hb_012395_090--Hb_011013_040 Hb_012395_090--Hb_002702_010 Hb_000155_020 Hb_000155_020 Hb_012395_090--Hb_000155_020 Hb_001942_010 Hb_001942_010 Hb_012395_090--Hb_001942_010 Hb_001159_050 Hb_001159_050 Hb_012395_090--Hb_001159_050 Hb_000005_060 Hb_000005_060 Hb_001266_010--Hb_000005_060 Hb_034235_010 Hb_034235_010 Hb_001266_010--Hb_034235_010 Hb_001266_010--Hb_011013_040 Hb_001975_120 Hb_001975_120 Hb_001266_010--Hb_001975_120 Hb_000069_440 Hb_000069_440 Hb_001266_010--Hb_000069_440 Hb_009476_030 Hb_009476_030 Hb_001266_010--Hb_009476_030 Hb_000413_050 Hb_000413_050 Hb_029695_090--Hb_000413_050 Hb_000007_330 Hb_000007_330 Hb_029695_090--Hb_000007_330 Hb_011472_030 Hb_011472_030 Hb_029695_090--Hb_011472_030 Hb_029695_090--Hb_012395_090 Hb_029695_090--Hb_000881_020 Hb_012098_100 Hb_012098_100 Hb_000881_020--Hb_012098_100 Hb_001158_130 Hb_001158_130 Hb_000881_020--Hb_001158_130 Hb_000042_280 Hb_000042_280 Hb_000881_020--Hb_000042_280 Hb_189208_070 Hb_189208_070 Hb_000881_020--Hb_189208_070 Hb_004635_120 Hb_004635_120 Hb_000881_020--Hb_004635_120 Hb_002702_010--Hb_011013_040 Hb_000046_120 Hb_000046_120 Hb_002702_010--Hb_000046_120 Hb_002702_010--Hb_001942_010 Hb_003371_080 Hb_003371_080 Hb_002702_010--Hb_003371_080 Hb_041433_010 Hb_041433_010 Hb_000608_270--Hb_041433_010 Hb_000608_270--Hb_001975_120 Hb_000608_270--Hb_009476_030 Hb_000608_270--Hb_000069_440 Hb_000608_270--Hb_034235_010 Hb_000608_270--Hb_001266_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.16679 10.7036 6.30961 0.0905341 0.0273454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.055365 0 0 0.0701664 9.30325

CAGE analysis