Hb_004223_200

Information

Type -
Description -
Location Contig4223: 143421-143803
Sequence    

Annotation

kegg
ID csv:101230000
description auxin-induced protein 6B-like
nr
ID XP_011652445.1
description PREDICTED: auxin-induced protein 6B-like [Cucumis sativus]
swissprot
ID Q9SGU2
description Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana GN=SAUR71 PE=2 SV=1
trembl
ID A0A061FKF0
description SAUR-like auxin-responsive protein family OS=Theobroma cacao GN=TCM_034196 PE=4 SV=1
Gene Ontology
ID GO:0009733
description auxin-induced protein 6b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41770: 143138-143915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004223_200 0.0 - - PREDICTED: auxin-induced protein 6B-like [Cucumis sativus]
2 Hb_004968_060 0.1477495429 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008725_200 0.1566054882 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
4 Hb_002200_120 0.1655753824 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000300_010 0.1680346112 - - multidrug resistance pump, putative [Ricinus communis]
6 Hb_000563_530 0.1713339105 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
7 Hb_017711_010 0.1744468749 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
8 Hb_000184_120 0.1750858628 - - hypothetical protein JCGZ_18526 [Jatropha curcas]
9 Hb_002368_040 0.1761031696 - - hypothetical protein PRUPE_ppa019172mg [Prunus persica]
10 Hb_005224_050 0.1789336287 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
11 Hb_001053_160 0.1831903921 - - hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
12 Hb_033448_010 0.1857774755 - - hypothetical protein JCGZ_19772 [Jatropha curcas]
13 Hb_007747_130 0.1968642151 - - PREDICTED: uncharacterized protein LOC105635879 [Jatropha curcas]
14 Hb_000009_040 0.1978143402 - - -
15 Hb_000369_090 0.2009036519 - - -
16 Hb_074590_010 0.2033415215 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]
17 Hb_000330_170 0.2035230914 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
18 Hb_000193_350 0.2052734452 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
19 Hb_000032_540 0.2107955864 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
20 Hb_000189_530 0.2120805162 - - 40S ribosomal protein S24B [Hevea brasiliensis]

Gene co-expression network

sample Hb_004223_200 Hb_004223_200 Hb_004968_060 Hb_004968_060 Hb_004223_200--Hb_004968_060 Hb_008725_200 Hb_008725_200 Hb_004223_200--Hb_008725_200 Hb_002200_120 Hb_002200_120 Hb_004223_200--Hb_002200_120 Hb_000300_010 Hb_000300_010 Hb_004223_200--Hb_000300_010 Hb_000563_530 Hb_000563_530 Hb_004223_200--Hb_000563_530 Hb_017711_010 Hb_017711_010 Hb_004223_200--Hb_017711_010 Hb_003327_060 Hb_003327_060 Hb_004968_060--Hb_003327_060 Hb_138413_010 Hb_138413_010 Hb_004968_060--Hb_138413_010 Hb_000914_060 Hb_000914_060 Hb_004968_060--Hb_000914_060 Hb_004968_060--Hb_000563_530 Hb_004968_060--Hb_002200_120 Hb_002687_050 Hb_002687_050 Hb_008725_200--Hb_002687_050 Hb_134789_010 Hb_134789_010 Hb_008725_200--Hb_134789_010 Hb_033448_010 Hb_033448_010 Hb_008725_200--Hb_033448_010 Hb_000032_540 Hb_000032_540 Hb_008725_200--Hb_000032_540 Hb_049415_020 Hb_049415_020 Hb_008725_200--Hb_049415_020 Hb_000144_090 Hb_000144_090 Hb_008725_200--Hb_000144_090 Hb_000184_120 Hb_000184_120 Hb_002200_120--Hb_000184_120 Hb_000330_170 Hb_000330_170 Hb_002200_120--Hb_000330_170 Hb_002200_120--Hb_000563_530 Hb_002200_120--Hb_033448_010 Hb_000369_090 Hb_000369_090 Hb_002200_120--Hb_000369_090 Hb_000061_160 Hb_000061_160 Hb_002200_120--Hb_000061_160 Hb_092272_020 Hb_092272_020 Hb_000300_010--Hb_092272_020 Hb_000300_010--Hb_000144_090 Hb_002248_050 Hb_002248_050 Hb_000300_010--Hb_002248_050 Hb_000300_010--Hb_008725_200 Hb_000300_010--Hb_004968_060 Hb_029223_030 Hb_029223_030 Hb_000300_010--Hb_029223_030 Hb_000563_530--Hb_033448_010 Hb_000563_530--Hb_000184_120 Hb_077562_040 Hb_077562_040 Hb_000563_530--Hb_077562_040 Hb_000563_530--Hb_000369_090 Hb_000366_100 Hb_000366_100 Hb_000563_530--Hb_000366_100 Hb_005224_050 Hb_005224_050 Hb_017711_010--Hb_005224_050 Hb_002293_030 Hb_002293_030 Hb_017711_010--Hb_002293_030 Hb_000193_350 Hb_000193_350 Hb_017711_010--Hb_000193_350 Hb_000175_400 Hb_000175_400 Hb_017711_010--Hb_000175_400 Hb_003058_220 Hb_003058_220 Hb_017711_010--Hb_003058_220 Hb_000009_040 Hb_000009_040 Hb_017711_010--Hb_000009_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.6548 0.349363 1.39631 7.44728 16.444 83.6674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.7794 98.1497 22.5216 2.55097 0

CAGE analysis