Hb_004223_230

Information

Type transcription factor
Description TF Family: ARF
Location Contig4223: 163978-170650
Sequence    

Annotation

kegg
ID rcu:RCOM_1597120
description Auxin response factor, putative
nr
ID XP_012073833.1
description PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
swissprot
ID P93024
description Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3
trembl
ID A0A067KLD5
description Auxin response factor OS=Jatropha curcas GN=JCGZ_08238 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 5-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41772: 164482-168703 , PASA_asmbl_41773: 165280-165581 , PASA_asmbl_41775: 169125-170639
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004223_230 0.0 transcription factor TF Family: ARF PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
2 Hb_005031_070 0.0893544182 - - RecName: Full=Major latex allergen Hev b 5; AltName: Allergen=Hev b 5 [Hevea brasiliensis]
3 Hb_004295_020 0.0945304807 - - thioredoxin II-type 1 [Hevea brasiliensis]
4 Hb_030620_010 0.10114358 - - -
5 Hb_000117_040 0.1128460386 - - 30S ribosomal protein S6A [Hevea brasiliensis]
6 Hb_102864_010 0.114893875 - - hypothetical protein POPTR_0008s14250g [Populus trichocarpa]
7 Hb_000313_380 0.1153671952 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007451_030 0.1179760257 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
9 Hb_002783_230 0.1226139832 - - neutral/alkaline invertase [Manihot esculenta]
10 Hb_009026_050 0.1260811991 - - vacuolar ATPase F subunit [Hevea brasiliensis]
11 Hb_001804_040 0.1280890074 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000856_340 0.1289936143 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
13 Hb_007992_030 0.1305964882 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
14 Hb_000866_300 0.1324552781 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
15 Hb_000260_050 0.1338145193 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
16 Hb_075812_010 0.1338645007 - - hypothetical protein POPTR_0005s04330g [Populus trichocarpa]
17 Hb_000339_070 0.1353543635 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Populus euphratica]
18 Hb_000163_290 0.1369187832 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
19 Hb_000045_130 0.1370523656 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
20 Hb_001366_230 0.1371802217 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004223_230 Hb_004223_230 Hb_005031_070 Hb_005031_070 Hb_004223_230--Hb_005031_070 Hb_004295_020 Hb_004295_020 Hb_004223_230--Hb_004295_020 Hb_030620_010 Hb_030620_010 Hb_004223_230--Hb_030620_010 Hb_000117_040 Hb_000117_040 Hb_004223_230--Hb_000117_040 Hb_102864_010 Hb_102864_010 Hb_004223_230--Hb_102864_010 Hb_000313_380 Hb_000313_380 Hb_004223_230--Hb_000313_380 Hb_004012_010 Hb_004012_010 Hb_005031_070--Hb_004012_010 Hb_002783_230 Hb_002783_230 Hb_005031_070--Hb_002783_230 Hb_000339_070 Hb_000339_070 Hb_005031_070--Hb_000339_070 Hb_002918_280 Hb_002918_280 Hb_005031_070--Hb_002918_280 Hb_169246_010 Hb_169246_010 Hb_005031_070--Hb_169246_010 Hb_007992_030 Hb_007992_030 Hb_004295_020--Hb_007992_030 Hb_000847_070 Hb_000847_070 Hb_004295_020--Hb_000847_070 Hb_000045_130 Hb_000045_130 Hb_004295_020--Hb_000045_130 Hb_052135_030 Hb_052135_030 Hb_004295_020--Hb_052135_030 Hb_017170_020 Hb_017170_020 Hb_004295_020--Hb_017170_020 Hb_030620_010--Hb_102864_010 Hb_000329_690 Hb_000329_690 Hb_030620_010--Hb_000329_690 Hb_030620_010--Hb_000117_040 Hb_006452_060 Hb_006452_060 Hb_030620_010--Hb_006452_060 Hb_002200_110 Hb_002200_110 Hb_030620_010--Hb_002200_110 Hb_011609_190 Hb_011609_190 Hb_000117_040--Hb_011609_190 Hb_000163_290 Hb_000163_290 Hb_000117_040--Hb_000163_290 Hb_026048_090 Hb_026048_090 Hb_000117_040--Hb_026048_090 Hb_000371_110 Hb_000371_110 Hb_000117_040--Hb_000371_110 Hb_004813_010 Hb_004813_010 Hb_000117_040--Hb_004813_010 Hb_000179_250 Hb_000179_250 Hb_000117_040--Hb_000179_250 Hb_001804_040 Hb_001804_040 Hb_102864_010--Hb_001804_040 Hb_001366_230 Hb_001366_230 Hb_102864_010--Hb_001366_230 Hb_000340_430 Hb_000340_430 Hb_102864_010--Hb_000340_430 Hb_007451_030 Hb_007451_030 Hb_102864_010--Hb_007451_030 Hb_000809_040 Hb_000809_040 Hb_000313_380--Hb_000809_040 Hb_000313_380--Hb_001366_230 Hb_001366_220 Hb_001366_220 Hb_000313_380--Hb_001366_220 Hb_002662_100 Hb_002662_100 Hb_000313_380--Hb_002662_100 Hb_009026_050 Hb_009026_050 Hb_000313_380--Hb_009026_050 Hb_021068_050 Hb_021068_050 Hb_000313_380--Hb_021068_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
85.1756 19.4578 4.44395 5.44727 76.0975 61.2464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.1575 90.4216 56.0337 6.26247 0.966561

CAGE analysis