Hb_004223_260

Information

Type -
Description -
Location Contig4223: 195964-198176
Sequence    

Annotation

kegg
ID pop:POPTR_0002s02650g
description POPTRDRAFT_643001; hypothetical protein
nr
ID KHG22467.1
description hypothetical protein F383_09277 [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0PCA2
description Uncharacterized protein OS=Gossypium arboreum GN=F383_09277 PE=4 SV=1
Gene Ontology
ID GO:0000276
description atp synthase e chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41777: 196327-198124
cDNA
(Sanger)
(ID:Location)		 002_L13.ab1: 196328-198124 , 029_H01.ab1: 196327-198098 , 047_G11.ab1: 196359-198055

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004223_260 0.0 - - hypothetical protein F383_09277 [Gossypium arboreum]
2 Hb_000819_070 0.0863519553 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
3 Hb_003349_070 0.0989922374 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
4 Hb_000106_100 0.1052160056 - - -
5 Hb_000780_210 0.1094336712 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
6 Hb_006718_010 0.1133044049 - - PREDICTED: histone H2AX-like [Elaeis guineensis]
7 Hb_001623_430 0.1156731898 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
8 Hb_007520_060 0.1211055799 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
9 Hb_001377_380 0.1242880033 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
10 Hb_000318_490 0.1276416423 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
11 Hb_000635_080 0.1329525268 - - 60S ribosomal protein L17A [Hevea brasiliensis]
12 Hb_004333_030 0.1331361951 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Jatropha curcas]
13 Hb_004474_010 0.1375039173 - - unnamed protein product [Coffea canephora]
14 Hb_000281_230 0.1377112712 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
15 Hb_000215_180 0.1407017421 - - hypothetical protein 17 [Hevea brasiliensis]
16 Hb_080477_060 0.1412008009 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000617_110 0.1415439283 - - translationally controlled tumor protein [Hevea brasiliensis]
18 Hb_030565_040 0.1445019541 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
19 Hb_004041_040 0.1456671165 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Camelina sativa]
20 Hb_183086_040 0.1497584801 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]

Gene co-expression network

sample Hb_004223_260 Hb_004223_260 Hb_000819_070 Hb_000819_070 Hb_004223_260--Hb_000819_070 Hb_003349_070 Hb_003349_070 Hb_004223_260--Hb_003349_070 Hb_000106_100 Hb_000106_100 Hb_004223_260--Hb_000106_100 Hb_000780_210 Hb_000780_210 Hb_004223_260--Hb_000780_210 Hb_006718_010 Hb_006718_010 Hb_004223_260--Hb_006718_010 Hb_001623_430 Hb_001623_430 Hb_004223_260--Hb_001623_430 Hb_000617_110 Hb_000617_110 Hb_000819_070--Hb_000617_110 Hb_001369_400 Hb_001369_400 Hb_000819_070--Hb_001369_400 Hb_000819_070--Hb_003349_070 Hb_000819_070--Hb_000780_210 Hb_000635_080 Hb_000635_080 Hb_000819_070--Hb_000635_080 Hb_003349_070--Hb_001623_430 Hb_003349_070--Hb_000106_100 Hb_000085_330 Hb_000085_330 Hb_003349_070--Hb_000085_330 Hb_183086_040 Hb_183086_040 Hb_003349_070--Hb_183086_040 Hb_000215_180 Hb_000215_180 Hb_000106_100--Hb_000215_180 Hb_000106_100--Hb_000780_210 Hb_000106_100--Hb_001623_430 Hb_000106_100--Hb_183086_040 Hb_001377_380 Hb_001377_380 Hb_000780_210--Hb_001377_380 Hb_000780_210--Hb_000635_080 Hb_000780_210--Hb_183086_040 Hb_000820_130 Hb_000820_130 Hb_000780_210--Hb_000820_130 Hb_002316_120 Hb_002316_120 Hb_000780_210--Hb_002316_120 Hb_012539_020 Hb_012539_020 Hb_000780_210--Hb_012539_020 Hb_002025_300 Hb_002025_300 Hb_006718_010--Hb_002025_300 Hb_000367_030 Hb_000367_030 Hb_006718_010--Hb_000367_030 Hb_006541_020 Hb_006541_020 Hb_006718_010--Hb_006541_020 Hb_000025_240 Hb_000025_240 Hb_006718_010--Hb_000025_240 Hb_007520_060 Hb_007520_060 Hb_006718_010--Hb_007520_060 Hb_030954_020 Hb_030954_020 Hb_001623_430--Hb_030954_020 Hb_001623_430--Hb_183086_040 Hb_001623_430--Hb_000780_210 Hb_004333_030 Hb_004333_030 Hb_001623_430--Hb_004333_030 Hb_000922_100 Hb_000922_100 Hb_001623_430--Hb_000922_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.66627 0.253494 1.78982 18.2507 14.5813 38.9993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
149.821 193.476 66.8803 37.5223 8.41079

CAGE analysis