Hb_004223_270

Information

Type -
Description -
Location Contig4223: 198250-202133
Sequence    

Annotation

kegg
ID rcu:RCOM_1596990
description hypothetical protein
nr
ID XP_012073837.1
description PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08241 PE=4 SV=1
Gene Ontology
ID GO:0044699
description tld-domain containing nucleolar protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41778: 198393-199246 , PASA_asmbl_41780: 201497-202091
cDNA
(Sanger)
(ID:Location)		 047_G11r.ab1: 196359-198055

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004223_270 0.0 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
2 Hb_000005_100 0.0641205043 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
3 Hb_000933_110 0.0830194516 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
4 Hb_000334_050 0.0871898019 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
5 Hb_022425_050 0.0878306162 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
6 Hb_001649_030 0.0945009279 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
7 Hb_005116_100 0.0951989839 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
8 Hb_002928_030 0.0964431764 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
9 Hb_025194_090 0.0980583111 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
10 Hb_027445_100 0.1016164691 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
11 Hb_000264_280 0.105050175 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
12 Hb_003752_090 0.105775433 - - chitinase, putative [Ricinus communis]
13 Hb_002044_160 0.1059956481 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
14 Hb_002374_450 0.1072096563 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
15 Hb_148146_010 0.1095443336 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
16 Hb_003664_030 0.1104847103 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
17 Hb_003055_070 0.1113899035 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
18 Hb_004346_040 0.1117694263 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
19 Hb_003020_250 0.1122769877 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
20 Hb_004648_030 0.1150387374 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]

Gene co-expression network

sample Hb_004223_270 Hb_004223_270 Hb_000005_100 Hb_000005_100 Hb_004223_270--Hb_000005_100 Hb_000933_110 Hb_000933_110 Hb_004223_270--Hb_000933_110 Hb_000334_050 Hb_000334_050 Hb_004223_270--Hb_000334_050 Hb_022425_050 Hb_022425_050 Hb_004223_270--Hb_022425_050 Hb_001649_030 Hb_001649_030 Hb_004223_270--Hb_001649_030 Hb_005116_100 Hb_005116_100 Hb_004223_270--Hb_005116_100 Hb_000005_100--Hb_022425_050 Hb_003055_070 Hb_003055_070 Hb_000005_100--Hb_003055_070 Hb_000976_130 Hb_000976_130 Hb_000005_100--Hb_000976_130 Hb_007765_130 Hb_007765_130 Hb_000005_100--Hb_007765_130 Hb_001053_020 Hb_001053_020 Hb_000005_100--Hb_001053_020 Hb_000933_110--Hb_000334_050 Hb_000260_160 Hb_000260_160 Hb_000933_110--Hb_000260_160 Hb_000446_040 Hb_000446_040 Hb_000933_110--Hb_000446_040 Hb_004346_040 Hb_004346_040 Hb_000933_110--Hb_004346_040 Hb_027445_100 Hb_027445_100 Hb_000933_110--Hb_027445_100 Hb_000334_050--Hb_022425_050 Hb_000334_050--Hb_027445_100 Hb_005731_100 Hb_005731_100 Hb_000334_050--Hb_005731_100 Hb_000327_200 Hb_000327_200 Hb_000334_050--Hb_000327_200 Hb_001865_010 Hb_001865_010 Hb_022425_050--Hb_001865_010 Hb_022425_050--Hb_005731_100 Hb_001124_140 Hb_001124_140 Hb_022425_050--Hb_001124_140 Hb_001969_130 Hb_001969_130 Hb_022425_050--Hb_001969_130 Hb_001269_500 Hb_001269_500 Hb_001649_030--Hb_001269_500 Hb_002928_030 Hb_002928_030 Hb_001649_030--Hb_002928_030 Hb_000665_270 Hb_000665_270 Hb_001649_030--Hb_000665_270 Hb_003752_090 Hb_003752_090 Hb_001649_030--Hb_003752_090 Hb_000358_040 Hb_000358_040 Hb_001649_030--Hb_000358_040 Hb_003376_390 Hb_003376_390 Hb_001649_030--Hb_003376_390 Hb_002005_040 Hb_002005_040 Hb_005116_100--Hb_002005_040 Hb_148146_010 Hb_148146_010 Hb_005116_100--Hb_148146_010 Hb_005618_080 Hb_005618_080 Hb_005116_100--Hb_005618_080 Hb_000402_020 Hb_000402_020 Hb_005116_100--Hb_000402_020 Hb_004055_160 Hb_004055_160 Hb_005116_100--Hb_004055_160 Hb_005116_100--Hb_001649_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.288537 1.50093 3.33536 1.65759 0.377133 0.34042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.467146 0.580347 0.256232 0.916559 4.28253

CAGE analysis