Hb_004223_280

Information

Type transcription factor
Description TF Family: C3H
Location Contig4223: 202926-209902
Sequence    

Annotation

kegg
ID rcu:RCOM_1596980
description nucleic acid binding protein, putative
nr
ID XP_012073844.1
description PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
swissprot
ID Q56XU4
description Zinc finger CCCH domain-containing protein 6 OS=Arabidopsis thaliana GN=At1g19860 PE=2 SV=1
trembl
ID A0A067KLD9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08243 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 6-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41781: 202992-204873 , PASA_asmbl_41782: 205853-206023 , PASA_asmbl_41783: 206453-209737
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004223_280 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
2 Hb_002137_020 0.0429994793 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_005357_030 0.0538374224 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]
4 Hb_002685_170 0.0588226886 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
5 Hb_000613_140 0.064999219 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
6 Hb_001477_130 0.0651779763 - - PREDICTED: uncharacterized protein LOC105646871 [Jatropha curcas]
7 Hb_000510_130 0.0656336549 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
8 Hb_000720_120 0.0672797602 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
9 Hb_005305_080 0.0684535914 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
10 Hb_012022_030 0.0700544283 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
11 Hb_001138_050 0.0711447536 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
12 Hb_004491_010 0.0716911375 - - 60S ribosomal protein L51, putative [Ricinus communis]
13 Hb_003126_080 0.0718369238 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
14 Hb_000205_160 0.073606715 - - Peroxisome biogenesis protein 12 [Morus notabilis]
15 Hb_001377_290 0.0739460446 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
16 Hb_001226_160 0.0767223796 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
17 Hb_007590_050 0.0779521537 - - NudC domain-containing protein, putative [Ricinus communis]
18 Hb_000656_400 0.0788515969 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
19 Hb_000398_180 0.0800858365 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
20 Hb_003615_010 0.0802422716 - - 60S ribosomal protein L8, putative [Ricinus communis]

Gene co-expression network

sample Hb_004223_280 Hb_004223_280 Hb_002137_020 Hb_002137_020 Hb_004223_280--Hb_002137_020 Hb_005357_030 Hb_005357_030 Hb_004223_280--Hb_005357_030 Hb_002685_170 Hb_002685_170 Hb_004223_280--Hb_002685_170 Hb_000613_140 Hb_000613_140 Hb_004223_280--Hb_000613_140 Hb_001477_130 Hb_001477_130 Hb_004223_280--Hb_001477_130 Hb_000510_130 Hb_000510_130 Hb_004223_280--Hb_000510_130 Hb_007441_230 Hb_007441_230 Hb_002137_020--Hb_007441_230 Hb_000571_120 Hb_000571_120 Hb_002137_020--Hb_000571_120 Hb_012022_030 Hb_012022_030 Hb_002137_020--Hb_012022_030 Hb_003464_060 Hb_003464_060 Hb_002137_020--Hb_003464_060 Hb_002016_110 Hb_002016_110 Hb_002137_020--Hb_002016_110 Hb_005357_030--Hb_002685_170 Hb_007590_050 Hb_007590_050 Hb_005357_030--Hb_007590_050 Hb_001138_050 Hb_001138_050 Hb_005357_030--Hb_001138_050 Hb_019253_020 Hb_019253_020 Hb_005357_030--Hb_019253_020 Hb_001226_160 Hb_001226_160 Hb_005357_030--Hb_001226_160 Hb_004491_010 Hb_004491_010 Hb_002685_170--Hb_004491_010 Hb_002685_170--Hb_007590_050 Hb_028995_040 Hb_028995_040 Hb_002685_170--Hb_028995_040 Hb_003126_080 Hb_003126_080 Hb_002685_170--Hb_003126_080 Hb_000720_120 Hb_000720_120 Hb_000613_140--Hb_000720_120 Hb_003020_230 Hb_003020_230 Hb_000613_140--Hb_003020_230 Hb_000926_250 Hb_000926_250 Hb_000613_140--Hb_000926_250 Hb_003615_010 Hb_003615_010 Hb_000613_140--Hb_003615_010 Hb_000613_140--Hb_000510_130 Hb_001477_130--Hb_002685_170 Hb_001477_130--Hb_002137_020 Hb_011828_020 Hb_011828_020 Hb_001477_130--Hb_011828_020 Hb_001477_130--Hb_000720_120 Hb_001477_130--Hb_005357_030 Hb_020956_020 Hb_020956_020 Hb_000510_130--Hb_020956_020 Hb_010504_020 Hb_010504_020 Hb_000510_130--Hb_010504_020 Hb_005305_080 Hb_005305_080 Hb_000510_130--Hb_005305_080 Hb_003092_040 Hb_003092_040 Hb_000510_130--Hb_003092_040 Hb_000953_020 Hb_000953_020 Hb_000510_130--Hb_000953_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.4786 18.6916 8.19343 10.1499 24.2028 28.2823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.7412 33.3383 26.5374 18.889 7.51524

CAGE analysis