Hb_004225_010

Information

Type -
Description -
Location Contig4225: 10402-10899
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41800: 9436-9706 , PASA_asmbl_41801: 10114-10410 , PASA_asmbl_41802: 10542-10727
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004225_010 0.0 - - -
2 Hb_005653_050 0.008913643 - - PREDICTED: CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase [Jatropha curcas]
3 Hb_001308_010 0.0397205146 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001373_170 0.0445831219 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
5 Hb_001454_420 0.0521877524 - - multidrug resistance pump, putative [Ricinus communis]
6 Hb_029584_030 0.0658242767 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
7 Hb_181908_010 0.0689142851 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
8 Hb_004957_010 0.0708134914 - - PREDICTED: probable aquaporin NIP-type [Prunus mume]
9 Hb_008008_040 0.0715880821 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
10 Hb_005614_060 0.074654324 - - Uncharacterized protein TCM_019750 [Theobroma cacao]
11 Hb_000664_010 0.0754927987 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]
12 Hb_000227_290 0.0815634719 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
13 Hb_003754_010 0.0839685218 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
14 Hb_092010_010 0.0896355678 - - cysteine proteinase inhibitor 5-like [Cucumis sativus]
15 Hb_000997_220 0.089696344 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
16 Hb_004440_030 0.0929317139 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
17 Hb_012114_090 0.0932509402 - - tubulin beta chain, putative [Ricinus communis]
18 Hb_005665_100 0.094382492 - - PREDICTED: RING-H2 finger protein ATL63-like [Populus euphratica]
19 Hb_177208_010 0.0982194251 transcription factor TF Family: MIKC MADS-box transcription factor, partial [Jatropha sp. CONN 198700232]
20 Hb_000445_410 0.1014122249 - - hypothetical protein EUGRSUZ_F02776 [Eucalyptus grandis]

Gene co-expression network

sample Hb_004225_010 Hb_004225_010 Hb_005653_050 Hb_005653_050 Hb_004225_010--Hb_005653_050 Hb_001308_010 Hb_001308_010 Hb_004225_010--Hb_001308_010 Hb_001373_170 Hb_001373_170 Hb_004225_010--Hb_001373_170 Hb_001454_420 Hb_001454_420 Hb_004225_010--Hb_001454_420 Hb_029584_030 Hb_029584_030 Hb_004225_010--Hb_029584_030 Hb_181908_010 Hb_181908_010 Hb_004225_010--Hb_181908_010 Hb_005653_050--Hb_001373_170 Hb_005653_050--Hb_001308_010 Hb_005653_050--Hb_001454_420 Hb_005653_050--Hb_181908_010 Hb_008008_040 Hb_008008_040 Hb_005653_050--Hb_008008_040 Hb_004957_010 Hb_004957_010 Hb_001308_010--Hb_004957_010 Hb_003754_010 Hb_003754_010 Hb_001308_010--Hb_003754_010 Hb_000997_220 Hb_000997_220 Hb_001308_010--Hb_000997_220 Hb_001308_010--Hb_001373_170 Hb_001373_170--Hb_001454_420 Hb_001373_170--Hb_008008_040 Hb_001373_170--Hb_181908_010 Hb_000445_410 Hb_000445_410 Hb_001373_170--Hb_000445_410 Hb_001454_420--Hb_181908_010 Hb_001454_420--Hb_008008_040 Hb_003858_010 Hb_003858_010 Hb_001454_420--Hb_003858_010 Hb_000664_010 Hb_000664_010 Hb_029584_030--Hb_000664_010 Hb_150179_010 Hb_150179_010 Hb_029584_030--Hb_150179_010 Hb_005665_100 Hb_005665_100 Hb_029584_030--Hb_005665_100 Hb_011224_030 Hb_011224_030 Hb_029584_030--Hb_011224_030 Hb_002471_310 Hb_002471_310 Hb_029584_030--Hb_002471_310 Hb_000227_290 Hb_000227_290 Hb_029584_030--Hb_000227_290 Hb_181908_010--Hb_008008_040 Hb_181908_010--Hb_003858_010 Hb_181908_010--Hb_000445_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.1294 8.14502 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.03401

CAGE analysis