Hb_004225_020

Information

Type -
Description -
Location Contig4225: 25305-26741
Sequence    

Annotation

kegg
ID rcu:RCOM_0875770
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002534209.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9ZUU7
description Pentatricopeptide repeat-containing protein At2g28050 OS=Arabidopsis thaliana GN=At2g28050 PE=3 SV=1
trembl
ID B9T7J0
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0875770 PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein at2g28050

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41807: 25906-26110
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004225_020 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_001001_060 0.0770317447 - - -
3 Hb_000915_050 0.0831833675 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002131_020 0.0849922629 transcription factor TF Family: IWS1 PREDICTED: protein IWS1 homolog [Jatropha curcas]
5 Hb_004204_020 0.0861426081 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
6 Hb_001663_030 0.089419257 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
7 Hb_001516_100 0.0902089992 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
8 Hb_002798_040 0.092846431 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
9 Hb_002493_100 0.0936867756 - - PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
10 Hb_000318_510 0.0938161062 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
11 Hb_000184_130 0.0944976871 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
12 Hb_000244_250 0.0950353562 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
13 Hb_004837_040 0.0972624016 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
14 Hb_005993_020 0.0975072628 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
15 Hb_000300_280 0.0980145005 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
16 Hb_002039_010 0.0991070302 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
17 Hb_004452_100 0.1010590061 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
18 Hb_002027_120 0.101396003 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
19 Hb_003362_040 0.1028293782 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
20 Hb_000370_030 0.1063204801 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]

Gene co-expression network

sample Hb_004225_020 Hb_004225_020 Hb_001001_060 Hb_001001_060 Hb_004225_020--Hb_001001_060 Hb_000915_050 Hb_000915_050 Hb_004225_020--Hb_000915_050 Hb_002131_020 Hb_002131_020 Hb_004225_020--Hb_002131_020 Hb_004204_020 Hb_004204_020 Hb_004225_020--Hb_004204_020 Hb_001663_030 Hb_001663_030 Hb_004225_020--Hb_001663_030 Hb_001516_100 Hb_001516_100 Hb_004225_020--Hb_001516_100 Hb_000009_170 Hb_000009_170 Hb_001001_060--Hb_000009_170 Hb_000120_800 Hb_000120_800 Hb_001001_060--Hb_000120_800 Hb_001001_060--Hb_004204_020 Hb_000190_140 Hb_000190_140 Hb_001001_060--Hb_000190_140 Hb_002027_120 Hb_002027_120 Hb_001001_060--Hb_002027_120 Hb_003362_040 Hb_003362_040 Hb_000915_050--Hb_003362_040 Hb_000244_250 Hb_000244_250 Hb_000915_050--Hb_000244_250 Hb_000184_130 Hb_000184_130 Hb_000915_050--Hb_000184_130 Hb_004055_040 Hb_004055_040 Hb_000915_050--Hb_004055_040 Hb_000283_070 Hb_000283_070 Hb_000915_050--Hb_000283_070 Hb_000915_050--Hb_004204_020 Hb_001680_010 Hb_001680_010 Hb_002131_020--Hb_001680_010 Hb_005993_020 Hb_005993_020 Hb_002131_020--Hb_005993_020 Hb_000983_150 Hb_000983_150 Hb_002131_020--Hb_000983_150 Hb_002835_370 Hb_002835_370 Hb_002131_020--Hb_002835_370 Hb_010931_120 Hb_010931_120 Hb_002131_020--Hb_010931_120 Hb_009627_010 Hb_009627_010 Hb_002131_020--Hb_009627_010 Hb_000703_220 Hb_000703_220 Hb_004204_020--Hb_000703_220 Hb_002030_030 Hb_002030_030 Hb_004204_020--Hb_002030_030 Hb_002039_010 Hb_002039_010 Hb_004204_020--Hb_002039_010 Hb_004204_020--Hb_000184_130 Hb_004204_020--Hb_003362_040 Hb_090804_010 Hb_090804_010 Hb_004204_020--Hb_090804_010 Hb_000577_010 Hb_000577_010 Hb_001663_030--Hb_000577_010 Hb_003994_240 Hb_003994_240 Hb_001663_030--Hb_003994_240 Hb_007163_090 Hb_007163_090 Hb_001663_030--Hb_007163_090 Hb_000802_080 Hb_000802_080 Hb_001663_030--Hb_000802_080 Hb_001789_090 Hb_001789_090 Hb_001663_030--Hb_001789_090 Hb_000260_220 Hb_000260_220 Hb_001663_030--Hb_000260_220 Hb_004734_060 Hb_004734_060 Hb_001516_100--Hb_004734_060 Hb_000953_010 Hb_000953_010 Hb_001516_100--Hb_000953_010 Hb_000836_360 Hb_000836_360 Hb_001516_100--Hb_000836_360 Hb_000808_180 Hb_000808_180 Hb_001516_100--Hb_000808_180 Hb_000977_070 Hb_000977_070 Hb_001516_100--Hb_000977_070 Hb_033152_080 Hb_033152_080 Hb_001516_100--Hb_033152_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.02145 2.28996 0.513927 1.40953 2.93997 3.75521
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.78934 1.75552 3.14742 2.77369 1.13211

CAGE analysis