Hb_004225_040

Information

Type -
Description -
Location Contig4225: 50670-53954
Sequence    

Annotation

kegg
ID pop:POPTR_0009s01470g
description POPTRDRAFT_833331; RUBISCO SUBUNIT BINDING-protein ALPHA SUBUNIT
nr
ID XP_011000529.1
description PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphratica]
swissprot
ID P08926
description RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2
trembl
ID B9HQD5
description RUBISCO SUBUNIT BINDING-protein ALPHA SUBUNIT OS=Populus trichocarpa GN=POPTR_0009s01470g PE=3 SV=1
Gene Ontology
ID GO:0005739
description rubisco subunit binding-protein alpha subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004225_040 0.0 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphratica]
2 Hb_000771_170 0.0795657244 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
3 Hb_001472_160 0.0807307192 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
4 Hb_004884_180 0.0864625906 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
5 Hb_000224_220 0.0885664226 - - PREDICTED: protein disulfide isomerase-like 2-3 [Jatropha curcas]
6 Hb_001140_180 0.0941289898 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
7 Hb_002828_060 0.0976570052 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
8 Hb_000482_050 0.0981899342 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
9 Hb_002973_110 0.1002410749 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_005914_040 0.1006194098 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
11 Hb_013749_050 0.1014667354 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
12 Hb_000041_300 0.1016264552 transcription factor TF Family: SNF2 PREDICTED: uncharacterized ATP-dependent helicase C23E6.02 isoform X2 [Jatropha curcas]
13 Hb_000562_070 0.1020451448 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
14 Hb_022250_100 0.1022390949 - - calnexin, putative [Ricinus communis]
15 Hb_001411_030 0.1030405923 - - hypothetical protein POPTR_0003s09620g [Populus trichocarpa]
16 Hb_002600_070 0.1036195112 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
17 Hb_000862_100 0.1043232559 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
18 Hb_005305_130 0.105730738 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
19 Hb_006846_080 0.1060774481 - - calnexin, putative [Ricinus communis]
20 Hb_007576_180 0.1095849761 - - PREDICTED: probable protein phosphatase 2C 62 isoform X5 [Jatropha curcas]

Gene co-expression network

sample Hb_004225_040 Hb_004225_040 Hb_000771_170 Hb_000771_170 Hb_004225_040--Hb_000771_170 Hb_001472_160 Hb_001472_160 Hb_004225_040--Hb_001472_160 Hb_004884_180 Hb_004884_180 Hb_004225_040--Hb_004884_180 Hb_000224_220 Hb_000224_220 Hb_004225_040--Hb_000224_220 Hb_001140_180 Hb_001140_180 Hb_004225_040--Hb_001140_180 Hb_002828_060 Hb_002828_060 Hb_004225_040--Hb_002828_060 Hb_002600_070 Hb_002600_070 Hb_000771_170--Hb_002600_070 Hb_000562_070 Hb_000562_070 Hb_000771_170--Hb_000562_070 Hb_000771_170--Hb_001472_160 Hb_000771_170--Hb_004884_180 Hb_000482_050 Hb_000482_050 Hb_000771_170--Hb_000482_050 Hb_025477_050 Hb_025477_050 Hb_001472_160--Hb_025477_050 Hb_001472_160--Hb_004884_180 Hb_000220_210 Hb_000220_210 Hb_001472_160--Hb_000220_210 Hb_000309_020 Hb_000309_020 Hb_001472_160--Hb_000309_020 Hb_002973_110 Hb_002973_110 Hb_001472_160--Hb_002973_110 Hb_004884_180--Hb_000220_210 Hb_031042_060 Hb_031042_060 Hb_004884_180--Hb_031042_060 Hb_010174_090 Hb_010174_090 Hb_004884_180--Hb_010174_090 Hb_000302_190 Hb_000302_190 Hb_000224_220--Hb_000302_190 Hb_005701_090 Hb_005701_090 Hb_000224_220--Hb_005701_090 Hb_000224_220--Hb_001140_180 Hb_000224_220--Hb_000771_170 Hb_001279_090 Hb_001279_090 Hb_000224_220--Hb_001279_090 Hb_029552_020 Hb_029552_020 Hb_001140_180--Hb_029552_020 Hb_001140_180--Hb_002828_060 Hb_001279_020 Hb_001279_020 Hb_001140_180--Hb_001279_020 Hb_001140_180--Hb_000562_070 Hb_001053_080 Hb_001053_080 Hb_001140_180--Hb_001053_080 Hb_001411_130 Hb_001411_130 Hb_001140_180--Hb_001411_130 Hb_003490_060 Hb_003490_060 Hb_002828_060--Hb_003490_060 Hb_068079_010 Hb_068079_010 Hb_002828_060--Hb_068079_010 Hb_002828_060--Hb_000482_050 Hb_000510_190 Hb_000510_190 Hb_002828_060--Hb_000510_190 Hb_002249_080 Hb_002249_080 Hb_002828_060--Hb_002249_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.3454 58.7954 99.5434 66.2966 64.6556 39.8986
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.0541 16.1071 24.6731 61.8684 163.391

CAGE analysis