Hb_004225_050

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig4225: 55390-61998
Sequence    

Annotation

kegg
ID rcu:RCOM_0545700
description DNA binding protein, putative
nr
ID XP_002529443.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID P37287
description Phosphatidylinositol N-acetylglucosaminyltransferase subunit A OS=Homo sapiens GN=PIGA PE=1 SV=1
trembl
ID B9STX4
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0545700 PE=4 SV=1
Gene Ontology
ID GO:0003677
description cyclin-d-binding myb-like transcription factor 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41812: 56096-57191 , PASA_asmbl_41814: 61433-82200
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004225_050 0.0 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
2 Hb_028912_050 0.0514579273 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
3 Hb_188063_020 0.0536662383 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006649_050 0.0608964189 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
5 Hb_000028_480 0.0641850509 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
6 Hb_002849_100 0.0665747713 - - PREDICTED: mechanosensitive ion channel protein 1, mitochondrial [Jatropha curcas]
7 Hb_001004_060 0.0666851533 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
8 Hb_001198_100 0.0691969456 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
9 Hb_001671_010 0.0697276684 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
10 Hb_010710_070 0.0715910877 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
11 Hb_002518_260 0.0721148956 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
12 Hb_006915_030 0.072148026 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
13 Hb_005686_090 0.0730859791 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
14 Hb_004143_130 0.0754132586 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
15 Hb_172632_080 0.0766473791 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
16 Hb_003253_040 0.0769211822 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
17 Hb_001696_010 0.0769587379 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
18 Hb_002942_100 0.0774859432 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
19 Hb_000291_050 0.0784457841 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
20 Hb_009548_020 0.0784595786 - - structural constituent of cell wall, putative [Ricinus communis]

Gene co-expression network

sample Hb_004225_050 Hb_004225_050 Hb_028912_050 Hb_028912_050 Hb_004225_050--Hb_028912_050 Hb_188063_020 Hb_188063_020 Hb_004225_050--Hb_188063_020 Hb_006649_050 Hb_006649_050 Hb_004225_050--Hb_006649_050 Hb_000028_480 Hb_000028_480 Hb_004225_050--Hb_000028_480 Hb_002849_100 Hb_002849_100 Hb_004225_050--Hb_002849_100 Hb_001004_060 Hb_001004_060 Hb_004225_050--Hb_001004_060 Hb_010710_070 Hb_010710_070 Hb_028912_050--Hb_010710_070 Hb_028912_050--Hb_188063_020 Hb_028912_050--Hb_000028_480 Hb_004963_030 Hb_004963_030 Hb_028912_050--Hb_004963_030 Hb_001008_120 Hb_001008_120 Hb_028912_050--Hb_001008_120 Hb_188063_020--Hb_002849_100 Hb_188063_020--Hb_010710_070 Hb_188063_020--Hb_004963_030 Hb_009548_020 Hb_009548_020 Hb_188063_020--Hb_009548_020 Hb_009767_110 Hb_009767_110 Hb_006649_050--Hb_009767_110 Hb_000165_250 Hb_000165_250 Hb_006649_050--Hb_000165_250 Hb_002725_120 Hb_002725_120 Hb_006649_050--Hb_002725_120 Hb_001198_100 Hb_001198_100 Hb_006649_050--Hb_001198_100 Hb_000291_050 Hb_000291_050 Hb_006649_050--Hb_000291_050 Hb_002518_260 Hb_002518_260 Hb_000028_480--Hb_002518_260 Hb_007479_040 Hb_007479_040 Hb_000028_480--Hb_007479_040 Hb_000792_010 Hb_000792_010 Hb_000028_480--Hb_000792_010 Hb_000028_480--Hb_001198_100 Hb_000976_300 Hb_000976_300 Hb_000028_480--Hb_000976_300 Hb_002849_100--Hb_010710_070 Hb_002849_100--Hb_004963_030 Hb_000343_250 Hb_000343_250 Hb_002849_100--Hb_000343_250 Hb_002496_010 Hb_002496_010 Hb_002849_100--Hb_002496_010 Hb_000329_710 Hb_000329_710 Hb_001004_060--Hb_000329_710 Hb_001004_060--Hb_000792_010 Hb_000327_270 Hb_000327_270 Hb_001004_060--Hb_000327_270 Hb_001999_290 Hb_001999_290 Hb_001004_060--Hb_001999_290 Hb_001205_230 Hb_001205_230 Hb_001004_060--Hb_001205_230 Hb_005736_020 Hb_005736_020 Hb_001004_060--Hb_005736_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.02664 7.80321 5.07674 6.45455 10.1838 10.4022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.78097 6.90992 12.2274 8.19063 12.5135

CAGE analysis