Hb_004225_060

Information

Type -
Description -
Location Contig4225: 75860-83367
Sequence    

Annotation

kegg
ID zma:100383334
description hypothetical protein
nr
ID KDO50928.1
description hypothetical protein CISIN_1g027511mg [Citrus sinensis]
swissprot
ID Q4H4F8
description 2-deoxystreptamine N-acetyl-D-glucosaminyltransferase OS=Bacillus circulans GN=btrM PE=3 SV=1
trembl
ID A0A067E763
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027511mg PE=4 SV=1
Gene Ontology
ID GO:0017176
description phosphatidylinositol n-acetylglucosaminyltransferase gpi3 subunit isoform x5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41814: 61433-82200 , PASA_asmbl_41815: 82416-83578
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004225_060 0.0 - - hypothetical protein CISIN_1g027511mg [Citrus sinensis]
2 Hb_000160_140 0.0499234432 - - PREDICTED: ELL-associated factor 2-like isoform X1 [Jatropha curcas]
3 Hb_000723_030 0.0530977881 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X1 [Jatropha curcas]
4 Hb_001500_120 0.0826340123 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_002203_030 0.0840703413 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
6 Hb_003687_120 0.0938319771 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
7 Hb_029622_120 0.0947674926 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
8 Hb_000086_430 0.0978060811 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
9 Hb_002110_160 0.098090725 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
10 Hb_010287_020 0.0986247952 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
11 Hb_000230_460 0.0986508234 - - Speckle-type POZ protein, putative [Ricinus communis]
12 Hb_000176_020 0.1035509049 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
13 Hb_002311_480 0.10363738 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
14 Hb_001439_220 0.1039791004 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
15 Hb_004659_010 0.1044378228 - - Guanine nucleotide-binding subunit beta-2 [Gossypium arboreum]
16 Hb_010775_030 0.1049933469 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
17 Hb_003470_040 0.1083114961 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
18 Hb_172979_010 0.1135264495 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
19 Hb_006452_180 0.1151619504 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
20 Hb_000137_010 0.1152727344 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]

Gene co-expression network

sample Hb_004225_060 Hb_004225_060 Hb_000160_140 Hb_000160_140 Hb_004225_060--Hb_000160_140 Hb_000723_030 Hb_000723_030 Hb_004225_060--Hb_000723_030 Hb_001500_120 Hb_001500_120 Hb_004225_060--Hb_001500_120 Hb_002203_030 Hb_002203_030 Hb_004225_060--Hb_002203_030 Hb_003687_120 Hb_003687_120 Hb_004225_060--Hb_003687_120 Hb_029622_120 Hb_029622_120 Hb_004225_060--Hb_029622_120 Hb_000160_140--Hb_000723_030 Hb_000160_140--Hb_002203_030 Hb_000230_460 Hb_000230_460 Hb_000160_140--Hb_000230_460 Hb_010287_020 Hb_010287_020 Hb_000160_140--Hb_010287_020 Hb_000137_010 Hb_000137_010 Hb_000160_140--Hb_000137_010 Hb_000723_030--Hb_002203_030 Hb_000723_030--Hb_001500_120 Hb_000723_030--Hb_003687_120 Hb_000723_030--Hb_029622_120 Hb_005977_030 Hb_005977_030 Hb_001500_120--Hb_005977_030 Hb_004712_190 Hb_004712_190 Hb_001500_120--Hb_004712_190 Hb_002311_480 Hb_002311_480 Hb_001500_120--Hb_002311_480 Hb_011671_310 Hb_011671_310 Hb_001500_120--Hb_011671_310 Hb_003470_040 Hb_003470_040 Hb_001500_120--Hb_003470_040 Hb_000476_060 Hb_000476_060 Hb_002203_030--Hb_000476_060 Hb_000176_020 Hb_000176_020 Hb_002203_030--Hb_000176_020 Hb_002203_030--Hb_000230_460 Hb_003687_120--Hb_003470_040 Hb_008725_050 Hb_008725_050 Hb_003687_120--Hb_008725_050 Hb_003428_090 Hb_003428_090 Hb_003687_120--Hb_003428_090 Hb_000890_160 Hb_000890_160 Hb_003687_120--Hb_000890_160 Hb_178968_060 Hb_178968_060 Hb_003687_120--Hb_178968_060 Hb_000537_100 Hb_000537_100 Hb_029622_120--Hb_000537_100 Hb_007558_090 Hb_007558_090 Hb_029622_120--Hb_007558_090 Hb_005946_040 Hb_005946_040 Hb_029622_120--Hb_005946_040 Hb_001900_140 Hb_001900_140 Hb_029622_120--Hb_001900_140 Hb_002435_100 Hb_002435_100 Hb_029622_120--Hb_002435_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.10877 2.31324 3.20968 1.14357 0.559934 0.640222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.787898 1.67689 0.876245 1.30256 1.42396

CAGE analysis