Hb_004225_080

Information

Type -
Description -
Location Contig4225: 91577-99586
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004225_080 0.0 - - -
2 Hb_001545_100 0.0983821836 - - PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]
3 Hb_000140_050 0.1075233841 - - PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial [Jatropha curcas]
4 Hb_000258_330 0.1075275822 - - Ran GTPase binding protein, putative [Ricinus communis]
5 Hb_003540_030 0.1115707952 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
6 Hb_002871_190 0.1118343429 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
7 Hb_010883_050 0.1156746199 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
8 Hb_000174_030 0.1158350158 - - hypothetical protein RCOM_1077370 [Ricinus communis]
9 Hb_000334_150 0.1161746336 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007904_260 0.1165236479 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
11 Hb_001279_340 0.1166266573 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
12 Hb_006831_120 0.1178576203 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
13 Hb_076233_040 0.1180341166 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
14 Hb_000046_100 0.1184689928 - - NADH dehydrogenase, putative [Ricinus communis]
15 Hb_001776_160 0.1204748685 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
16 Hb_003849_150 0.1205067742 - - PREDICTED: uncharacterized protein LOC105644698 [Jatropha curcas]
17 Hb_002503_020 0.1207224379 - - Phosphatase 2C family protein, putative [Theobroma cacao]
18 Hb_003086_150 0.1214442888 - - PREDICTED: uncharacterized protein LOC105635789 [Jatropha curcas]
19 Hb_001904_090 0.1216072369 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
20 Hb_034380_020 0.1224423787 - - PREDICTED: phosphoglycerate mutase-like [Jatropha curcas]

Gene co-expression network

sample Hb_004225_080 Hb_004225_080 Hb_001545_100 Hb_001545_100 Hb_004225_080--Hb_001545_100 Hb_000140_050 Hb_000140_050 Hb_004225_080--Hb_000140_050 Hb_000258_330 Hb_000258_330 Hb_004225_080--Hb_000258_330 Hb_003540_030 Hb_003540_030 Hb_004225_080--Hb_003540_030 Hb_002871_190 Hb_002871_190 Hb_004225_080--Hb_002871_190 Hb_010883_050 Hb_010883_050 Hb_004225_080--Hb_010883_050 Hb_001545_100--Hb_003540_030 Hb_001545_100--Hb_000140_050 Hb_001279_340 Hb_001279_340 Hb_001545_100--Hb_001279_340 Hb_006831_120 Hb_006831_120 Hb_001545_100--Hb_006831_120 Hb_001946_330 Hb_001946_330 Hb_001545_100--Hb_001946_330 Hb_000140_050--Hb_003540_030 Hb_000140_050--Hb_006831_120 Hb_001776_160 Hb_001776_160 Hb_000140_050--Hb_001776_160 Hb_028872_080 Hb_028872_080 Hb_000140_050--Hb_028872_080 Hb_007904_260 Hb_007904_260 Hb_000140_050--Hb_007904_260 Hb_000046_100 Hb_000046_100 Hb_000258_330--Hb_000046_100 Hb_003582_040 Hb_003582_040 Hb_000258_330--Hb_003582_040 Hb_001080_280 Hb_001080_280 Hb_000258_330--Hb_001080_280 Hb_009510_020 Hb_009510_020 Hb_000258_330--Hb_009510_020 Hb_000258_330--Hb_001279_340 Hb_000120_960 Hb_000120_960 Hb_003540_030--Hb_000120_960 Hb_003540_030--Hb_001776_160 Hb_000436_130 Hb_000436_130 Hb_003540_030--Hb_000436_130 Hb_000086_280 Hb_000086_280 Hb_003540_030--Hb_000086_280 Hb_003728_060 Hb_003728_060 Hb_002871_190--Hb_003728_060 Hb_026889_030 Hb_026889_030 Hb_002871_190--Hb_026889_030 Hb_050514_010 Hb_050514_010 Hb_002871_190--Hb_050514_010 Hb_010361_010 Hb_010361_010 Hb_002871_190--Hb_010361_010 Hb_002600_090 Hb_002600_090 Hb_002871_190--Hb_002600_090 Hb_000827_050 Hb_000827_050 Hb_002871_190--Hb_000827_050 Hb_010883_050--Hb_000436_130 Hb_006420_080 Hb_006420_080 Hb_010883_050--Hb_006420_080 Hb_002007_210 Hb_002007_210 Hb_010883_050--Hb_002007_210 Hb_000336_240 Hb_000336_240 Hb_010883_050--Hb_000336_240 Hb_076233_040 Hb_076233_040 Hb_010883_050--Hb_076233_040 Hb_003697_040 Hb_003697_040 Hb_010883_050--Hb_003697_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.11306 0.77452 3.52862 3.34354 0.817514 2.3896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.46726 4.59266 7.261 2.55486 3.10328

CAGE analysis