Hb_004225_120

Information

Type -
Description -
Location Contig4225: 134056-138026
Sequence    

Annotation

kegg
ID rcu:RCOM_0545220
description electron transporter, putative
nr
ID XP_012064766.1
description PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9STW6
description Electron transporter, putative OS=Ricinus communis GN=RCOM_0545220 PE=4 SV=1
Gene Ontology
ID GO:0009507
description topoisomerase 1-associated factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41817: 134888-137075 , PASA_asmbl_41818: 137119-137696 , PASA_asmbl_41819: 137732-138048
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004225_120 0.0 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
2 Hb_011224_070 0.0535829146 - - PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
3 Hb_003747_160 0.0548099049 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003376_060 0.0627194943 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
5 Hb_005614_020 0.0706753741 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
6 Hb_070771_010 0.0728791445 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
7 Hb_001051_060 0.0738166688 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
8 Hb_015807_090 0.0754193552 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
9 Hb_002499_030 0.0785032002 - - receptor-kinase, putative [Ricinus communis]
10 Hb_009476_080 0.0834239517 - - BnaA03g18920D [Brassica napus]
11 Hb_000964_080 0.0844999424 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
12 Hb_000339_060 0.0858562542 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
13 Hb_001511_220 0.0858629017 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
14 Hb_000413_030 0.0864276576 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
15 Hb_000608_090 0.0877152933 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001269_160 0.0882834342 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001096_010 0.0884393127 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
18 Hb_001104_060 0.088697971 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
19 Hb_005686_040 0.0891738717 - - conserved hypothetical protein [Ricinus communis]
20 Hb_135052_010 0.0897391586 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]

Gene co-expression network

sample Hb_004225_120 Hb_004225_120 Hb_011224_070 Hb_011224_070 Hb_004225_120--Hb_011224_070 Hb_003747_160 Hb_003747_160 Hb_004225_120--Hb_003747_160 Hb_003376_060 Hb_003376_060 Hb_004225_120--Hb_003376_060 Hb_005614_020 Hb_005614_020 Hb_004225_120--Hb_005614_020 Hb_070771_010 Hb_070771_010 Hb_004225_120--Hb_070771_010 Hb_001051_060 Hb_001051_060 Hb_004225_120--Hb_001051_060 Hb_011224_070--Hb_003747_160 Hb_011224_070--Hb_003376_060 Hb_001511_220 Hb_001511_220 Hb_011224_070--Hb_001511_220 Hb_001096_010 Hb_001096_010 Hb_011224_070--Hb_001096_010 Hb_011224_070--Hb_005614_020 Hb_003747_160--Hb_001051_060 Hb_015807_090 Hb_015807_090 Hb_003747_160--Hb_015807_090 Hb_005686_040 Hb_005686_040 Hb_003747_160--Hb_005686_040 Hb_009476_080 Hb_009476_080 Hb_003747_160--Hb_009476_080 Hb_001456_030 Hb_001456_030 Hb_003376_060--Hb_001456_030 Hb_005616_020 Hb_005616_020 Hb_003376_060--Hb_005616_020 Hb_000964_080 Hb_000964_080 Hb_003376_060--Hb_000964_080 Hb_000413_030 Hb_000413_030 Hb_003376_060--Hb_000413_030 Hb_003376_060--Hb_003747_160 Hb_005614_020--Hb_003747_160 Hb_002499_030 Hb_002499_030 Hb_005614_020--Hb_002499_030 Hb_005614_020--Hb_015807_090 Hb_042083_010 Hb_042083_010 Hb_005614_020--Hb_042083_010 Hb_002085_060 Hb_002085_060 Hb_070771_010--Hb_002085_060 Hb_000339_060 Hb_000339_060 Hb_070771_010--Hb_000339_060 Hb_001307_180 Hb_001307_180 Hb_070771_010--Hb_001307_180 Hb_011912_010 Hb_011912_010 Hb_070771_010--Hb_011912_010 Hb_003645_040 Hb_003645_040 Hb_070771_010--Hb_003645_040 Hb_003638_020 Hb_003638_020 Hb_070771_010--Hb_003638_020 Hb_001051_060--Hb_005686_040 Hb_000086_490 Hb_000086_490 Hb_001051_060--Hb_000086_490 Hb_005523_030 Hb_005523_030 Hb_001051_060--Hb_005523_030 Hb_001051_060--Hb_015807_090 Hb_002078_180 Hb_002078_180 Hb_001051_060--Hb_002078_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0374698 3.54653 5.71117 63.8291 0.190257 0.0857565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.117218 0.22259 0.21974 29.0276

CAGE analysis