Hb_004225_130

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig4225: 145274-152266
Sequence    

Annotation

kegg
ID rcu:RCOM_0545200
description hypothetical protein
nr
ID XP_012064767.1
description PREDICTED: uncharacterized protein LOC105628060 isoform X1 [Jatropha curcas]
swissprot
ID Q9LL45
description Telomere-binding protein 1 OS=Oryza sativa subsp. japonica GN=TBP1 PE=1 SV=2
trembl
ID A0A067LIF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05481 PE=4 SV=1
Gene Ontology
ID GO:0005488
description telomere repeat-binding protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41820: 145276-152203 , PASA_asmbl_41821: 145309-152187
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004225_130 0.0 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105628060 isoform X1 [Jatropha curcas]
2 Hb_002235_320 0.0534600747 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
3 Hb_001396_290 0.0689576445 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
4 Hb_002048_090 0.081968232 - - PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]
5 Hb_006002_030 0.0827482211 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
6 Hb_000239_070 0.0850583523 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
7 Hb_002411_120 0.0872337486 - - PREDICTED: uncharacterized protein LOC105631645 [Jatropha curcas]
8 Hb_003866_020 0.0881372975 - - conserved hypothetical protein [Ricinus communis]
9 Hb_073171_080 0.0895934473 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
10 Hb_000244_240 0.090181478 - - ATP binding protein, putative [Ricinus communis]
11 Hb_004037_030 0.090207089 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
12 Hb_006829_090 0.0905727067 - - PREDICTED: protein MOS2 [Jatropha curcas]
13 Hb_000327_310 0.0912569954 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
14 Hb_002883_010 0.0916408997 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
15 Hb_000331_190 0.092079197 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
16 Hb_002133_030 0.0921792633 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
17 Hb_000340_160 0.0923994477 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
18 Hb_031091_010 0.0930353007 - - crooked neck protein, putative [Ricinus communis]
19 Hb_078477_040 0.0932110082 - - nuclear movement protein nudc, putative [Ricinus communis]
20 Hb_000003_790 0.093484272 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_004225_130 Hb_004225_130 Hb_002235_320 Hb_002235_320 Hb_004225_130--Hb_002235_320 Hb_001396_290 Hb_001396_290 Hb_004225_130--Hb_001396_290 Hb_002048_090 Hb_002048_090 Hb_004225_130--Hb_002048_090 Hb_006002_030 Hb_006002_030 Hb_004225_130--Hb_006002_030 Hb_000239_070 Hb_000239_070 Hb_004225_130--Hb_000239_070 Hb_002411_120 Hb_002411_120 Hb_004225_130--Hb_002411_120 Hb_002883_010 Hb_002883_010 Hb_002235_320--Hb_002883_010 Hb_002235_320--Hb_000239_070 Hb_002235_320--Hb_006002_030 Hb_007416_310 Hb_007416_310 Hb_002235_320--Hb_007416_310 Hb_001019_170 Hb_001019_170 Hb_002235_320--Hb_001019_170 Hb_000120_510 Hb_000120_510 Hb_001396_290--Hb_000120_510 Hb_001396_290--Hb_002048_090 Hb_000504_160 Hb_000504_160 Hb_001396_290--Hb_000504_160 Hb_006829_090 Hb_006829_090 Hb_001396_290--Hb_006829_090 Hb_073171_080 Hb_073171_080 Hb_001396_290--Hb_073171_080 Hb_002048_090--Hb_073171_080 Hb_009913_050 Hb_009913_050 Hb_002048_090--Hb_009913_050 Hb_000244_240 Hb_000244_240 Hb_002048_090--Hb_000244_240 Hb_002048_090--Hb_002883_010 Hb_078477_040 Hb_078477_040 Hb_006002_030--Hb_078477_040 Hb_001278_060 Hb_001278_060 Hb_006002_030--Hb_001278_060 Hb_006002_030--Hb_006829_090 Hb_000213_070 Hb_000213_070 Hb_006002_030--Hb_000213_070 Hb_003018_160 Hb_003018_160 Hb_006002_030--Hb_003018_160 Hb_000340_160 Hb_000340_160 Hb_000239_070--Hb_000340_160 Hb_000227_380 Hb_000227_380 Hb_000239_070--Hb_000227_380 Hb_000239_070--Hb_002883_010 Hb_000331_190 Hb_000331_190 Hb_000239_070--Hb_000331_190 Hb_175338_020 Hb_175338_020 Hb_000239_070--Hb_175338_020 Hb_000594_020 Hb_000594_020 Hb_002411_120--Hb_000594_020 Hb_009151_020 Hb_009151_020 Hb_002411_120--Hb_009151_020 Hb_001080_270 Hb_001080_270 Hb_002411_120--Hb_001080_270 Hb_020665_030 Hb_020665_030 Hb_002411_120--Hb_020665_030 Hb_002499_070 Hb_002499_070 Hb_002411_120--Hb_002499_070 Hb_004899_070 Hb_004899_070 Hb_002411_120--Hb_004899_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.1828 40.3341 18.4019 13.4301 67.713 86.8481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.1086 16.3765 18.0275 16.3276 10.7993

CAGE analysis