Hb_004225_140

Information

Type -
Description -
Location Contig4225: 154318-155694
Sequence    

Annotation

kegg
ID rcu:RCOM_0545190
description ATP binding protein, putative
nr
ID XP_012064770.1
description PREDICTED: probable receptor-like protein kinase At1g33260 [Jatropha curcas]
swissprot
ID F4IB81
description LysM domain receptor-like kinase 3 OS=Arabidopsis thaliana GN=LYK3 PE=2 SV=1
trembl
ID A0A067LHD8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05482 PE=4 SV=1
Gene Ontology
ID GO:0005886
description lysm domain receptor-like kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004225_140 0.0 - - PREDICTED: probable receptor-like protein kinase At1g33260 [Jatropha curcas]
2 Hb_000136_020 0.1686775398 - - PREDICTED: F-box/kelch-repeat protein At1g80440-like [Jatropha curcas]
3 Hb_001250_040 0.1758564053 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]
4 Hb_001689_050 0.1830327293 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
5 Hb_003175_060 0.1836036118 - - PREDICTED: uncharacterized protein LOC105649287 [Jatropha curcas]
6 Hb_173660_010 0.1863594741 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Malus domestica]
7 Hb_001571_030 0.18659939 - - PREDICTED: uncharacterized protein LOC105640040 isoform X1 [Jatropha curcas]
8 Hb_002301_210 0.2009938268 - - PREDICTED: receptor-like protein kinase At5g59670 isoform X2 [Jatropha curcas]
9 Hb_001863_340 0.2032185974 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
10 Hb_110252_010 0.2063948315 - - hypothetical protein JCGZ_16705 [Jatropha curcas]
11 Hb_004324_210 0.2068395587 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
12 Hb_000069_500 0.2142086418 - - PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Jatropha curcas]
13 Hb_000997_100 0.2187506832 - - PREDICTED: uncharacterized protein LOC105632094 isoform X2 [Jatropha curcas]
14 Hb_004447_050 0.2228984723 - - PREDICTED: high-light-induced protein, chloroplastic [Jatropha curcas]
15 Hb_000934_260 0.2233110069 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_007576_070 0.2242318471 - - PREDICTED: uncharacterized protein LOC105640040 isoform X3 [Jatropha curcas]
17 Hb_000076_090 0.2267482532 - - protein with unknown function [Ricinus communis]
18 Hb_006846_160 0.2271644333 - - electron transporter, putative [Ricinus communis]
19 Hb_003683_030 0.2284614376 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
20 Hb_002498_170 0.2288838021 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_004225_140 Hb_004225_140 Hb_000136_020 Hb_000136_020 Hb_004225_140--Hb_000136_020 Hb_001250_040 Hb_001250_040 Hb_004225_140--Hb_001250_040 Hb_001689_050 Hb_001689_050 Hb_004225_140--Hb_001689_050 Hb_003175_060 Hb_003175_060 Hb_004225_140--Hb_003175_060 Hb_173660_010 Hb_173660_010 Hb_004225_140--Hb_173660_010 Hb_001571_030 Hb_001571_030 Hb_004225_140--Hb_001571_030 Hb_000136_020--Hb_001250_040 Hb_000136_020--Hb_001571_030 Hb_000076_090 Hb_000076_090 Hb_000136_020--Hb_000076_090 Hb_002301_210 Hb_002301_210 Hb_000136_020--Hb_002301_210 Hb_001863_340 Hb_001863_340 Hb_000136_020--Hb_001863_340 Hb_000928_250 Hb_000928_250 Hb_000136_020--Hb_000928_250 Hb_001250_040--Hb_001689_050 Hb_003683_030 Hb_003683_030 Hb_001250_040--Hb_003683_030 Hb_001250_040--Hb_001571_030 Hb_007594_080 Hb_007594_080 Hb_001250_040--Hb_007594_080 Hb_001624_040 Hb_001624_040 Hb_001250_040--Hb_001624_040 Hb_001689_050--Hb_003683_030 Hb_001689_050--Hb_007594_080 Hb_003894_060 Hb_003894_060 Hb_001689_050--Hb_003894_060 Hb_004837_210 Hb_004837_210 Hb_001689_050--Hb_004837_210 Hb_001953_100 Hb_001953_100 Hb_001689_050--Hb_001953_100 Hb_003175_060--Hb_000136_020 Hb_002030_110 Hb_002030_110 Hb_003175_060--Hb_002030_110 Hb_000077_210 Hb_000077_210 Hb_003175_060--Hb_000077_210 Hb_071072_010 Hb_071072_010 Hb_003175_060--Hb_071072_010 Hb_003175_060--Hb_001863_340 Hb_000934_260 Hb_000934_260 Hb_173660_010--Hb_000934_260 Hb_137600_010 Hb_137600_010 Hb_173660_010--Hb_137600_010 Hb_173660_010--Hb_001689_050 Hb_005074_050 Hb_005074_050 Hb_173660_010--Hb_005074_050 Hb_004208_090 Hb_004208_090 Hb_173660_010--Hb_004208_090 Hb_110252_010 Hb_110252_010 Hb_173660_010--Hb_110252_010 Hb_003090_150 Hb_003090_150 Hb_001571_030--Hb_003090_150 Hb_000805_200 Hb_000805_200 Hb_001571_030--Hb_000805_200 Hb_007576_070 Hb_007576_070 Hb_001571_030--Hb_007576_070 Hb_027380_210 Hb_027380_210 Hb_001571_030--Hb_027380_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.184847 0.589918 1.3369 0.57077 0.295202 0.314793
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.101585 0 0.961181

CAGE analysis