Hb_004226_020

Information

Type -
Description -
Location Contig4226: 3812-4373
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41833: 3025-4325
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004226_020 0.0 - - -
2 Hb_004968_100 0.1010712346 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
3 Hb_034299_060 0.1135390494 transcription factor TF Family: Orphans PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
4 Hb_005357_150 0.1317130673 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_163145_020 0.1322394073 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
6 Hb_000429_170 0.1366007911 - - PREDICTED: adenylosuccinate synthetase 2, chloroplastic [Jatropha curcas]
7 Hb_002973_080 0.1368467456 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
8 Hb_003151_050 0.1386483915 desease resistance Gene Name: MMR_HSR1 PREDICTED: uncharacterized protein LOC105639402 isoform X1 [Jatropha curcas]
9 Hb_000402_200 0.1392244358 - - PREDICTED: uncharacterized protein LOC105644655 [Jatropha curcas]
10 Hb_003475_010 0.1396885836 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
11 Hb_176681_010 0.1418826699 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
12 Hb_001863_390 0.1429451937 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
13 Hb_011485_040 0.14367769 - - PREDICTED: probable mitochondrial adenine nucleotide transporter BTL3 [Jatropha curcas]
14 Hb_010638_020 0.1465856453 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
15 Hb_001635_100 0.1475239781 - - PREDICTED: dentin sialophosphoprotein isoform X5 [Populus euphratica]
16 Hb_001277_330 0.1479056138 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
17 Hb_000175_440 0.1489672409 - - signal peptidase family protein [Populus trichocarpa]
18 Hb_000001_140 0.14915083 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
19 Hb_004108_050 0.1500739157 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
20 Hb_007672_050 0.1505175487 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004226_020 Hb_004226_020 Hb_004968_100 Hb_004968_100 Hb_004226_020--Hb_004968_100 Hb_034299_060 Hb_034299_060 Hb_004226_020--Hb_034299_060 Hb_005357_150 Hb_005357_150 Hb_004226_020--Hb_005357_150 Hb_163145_020 Hb_163145_020 Hb_004226_020--Hb_163145_020 Hb_000429_170 Hb_000429_170 Hb_004226_020--Hb_000429_170 Hb_002973_080 Hb_002973_080 Hb_004226_020--Hb_002973_080 Hb_003475_010 Hb_003475_010 Hb_004968_100--Hb_003475_010 Hb_006076_010 Hb_006076_010 Hb_004968_100--Hb_006076_010 Hb_000062_560 Hb_000062_560 Hb_004968_100--Hb_000062_560 Hb_001221_170 Hb_001221_170 Hb_004968_100--Hb_001221_170 Hb_002518_140 Hb_002518_140 Hb_004968_100--Hb_002518_140 Hb_034299_060--Hb_000429_170 Hb_054127_040 Hb_054127_040 Hb_034299_060--Hb_054127_040 Hb_003151_050 Hb_003151_050 Hb_034299_060--Hb_003151_050 Hb_006824_020 Hb_006824_020 Hb_034299_060--Hb_006824_020 Hb_000622_040 Hb_000622_040 Hb_034299_060--Hb_000622_040 Hb_034299_060--Hb_005357_150 Hb_001981_090 Hb_001981_090 Hb_005357_150--Hb_001981_090 Hb_004108_050 Hb_004108_050 Hb_005357_150--Hb_004108_050 Hb_003057_120 Hb_003057_120 Hb_005357_150--Hb_003057_120 Hb_005357_150--Hb_003151_050 Hb_003408_030 Hb_003408_030 Hb_005357_150--Hb_003408_030 Hb_004800_160 Hb_004800_160 Hb_005357_150--Hb_004800_160 Hb_001329_300 Hb_001329_300 Hb_163145_020--Hb_001329_300 Hb_000567_260 Hb_000567_260 Hb_163145_020--Hb_000567_260 Hb_000635_220 Hb_000635_220 Hb_163145_020--Hb_000635_220 Hb_002006_090 Hb_002006_090 Hb_163145_020--Hb_002006_090 Hb_000457_150 Hb_000457_150 Hb_163145_020--Hb_000457_150 Hb_000614_230 Hb_000614_230 Hb_163145_020--Hb_000614_230 Hb_002253_070 Hb_002253_070 Hb_000429_170--Hb_002253_070 Hb_007924_020 Hb_007924_020 Hb_000429_170--Hb_007924_020 Hb_000429_170--Hb_000622_040 Hb_000429_170--Hb_003151_050 Hb_000834_270 Hb_000834_270 Hb_000429_170--Hb_000834_270 Hb_000025_200 Hb_000025_200 Hb_002973_080--Hb_000025_200 Hb_000352_110 Hb_000352_110 Hb_002973_080--Hb_000352_110 Hb_004970_200 Hb_004970_200 Hb_002973_080--Hb_004970_200 Hb_000001_020 Hb_000001_020 Hb_002973_080--Hb_000001_020 Hb_000107_390 Hb_000107_390 Hb_002973_080--Hb_000107_390 Hb_010638_020 Hb_010638_020 Hb_002973_080--Hb_010638_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9909 6.49366 4.04168 2.71541 21.8234 5.56073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.5777 11.0063 21.7421 4.77803 4.06692

CAGE analysis