Hb_004228_020

Information

Type -
Description -
Location Contig4228: 36106-39024
Sequence    

Annotation

kegg
ID rcu:RCOM_0990520
description pentatricopeptide repeat-containing protein, putative
nr
ID KDP21395.1
description hypothetical protein JCGZ_21866 [Jatropha curcas]
swissprot
ID Q9M1V3
description Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2
trembl
ID A0A067JMZ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21866 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41847: 36212-36643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004228_020 0.0 - - hypothetical protein JCGZ_21866 [Jatropha curcas]
2 Hb_001268_380 0.0696928208 - - PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Jatropha curcas]
3 Hb_000321_150 0.0824157263 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
4 Hb_001967_030 0.0931826896 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
5 Hb_000977_120 0.0932832029 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
6 Hb_005539_090 0.093682426 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]
7 Hb_006117_080 0.0958800219 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
8 Hb_007818_020 0.0960747722 - - predicted protein [Physcomitrella patens]
9 Hb_008775_040 0.1004287276 - - Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao]
10 Hb_002636_100 0.1005851667 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
11 Hb_000264_320 0.1014217529 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Jatropha curcas]
12 Hb_000832_320 0.1016522494 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
13 Hb_000174_220 0.1046945758 - - cohesin subunit rad21, putative [Ricinus communis]
14 Hb_024185_010 0.1050520748 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
15 Hb_002263_040 0.1073826466 - - carbon catabolite repressor protein, putative [Ricinus communis]
16 Hb_002235_300 0.1078526553 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]
17 Hb_003729_030 0.1083785191 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
18 Hb_009150_020 0.108702358 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
19 Hb_000890_050 0.1087802584 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
20 Hb_009767_080 0.1092236918 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]

Gene co-expression network

sample Hb_004228_020 Hb_004228_020 Hb_001268_380 Hb_001268_380 Hb_004228_020--Hb_001268_380 Hb_000321_150 Hb_000321_150 Hb_004228_020--Hb_000321_150 Hb_001967_030 Hb_001967_030 Hb_004228_020--Hb_001967_030 Hb_000977_120 Hb_000977_120 Hb_004228_020--Hb_000977_120 Hb_005539_090 Hb_005539_090 Hb_004228_020--Hb_005539_090 Hb_006117_080 Hb_006117_080 Hb_004228_020--Hb_006117_080 Hb_009767_080 Hb_009767_080 Hb_001268_380--Hb_009767_080 Hb_000890_050 Hb_000890_050 Hb_001268_380--Hb_000890_050 Hb_002780_010 Hb_002780_010 Hb_001268_380--Hb_002780_010 Hb_005486_030 Hb_005486_030 Hb_001268_380--Hb_005486_030 Hb_002007_160 Hb_002007_160 Hb_001268_380--Hb_002007_160 Hb_003729_030 Hb_003729_030 Hb_000321_150--Hb_003729_030 Hb_000321_150--Hb_006117_080 Hb_000069_470 Hb_000069_470 Hb_000321_150--Hb_000069_470 Hb_000661_130 Hb_000661_130 Hb_000321_150--Hb_000661_130 Hb_000321_150--Hb_009767_080 Hb_000321_150--Hb_000977_120 Hb_000540_060 Hb_000540_060 Hb_001967_030--Hb_000540_060 Hb_014267_010 Hb_014267_010 Hb_001967_030--Hb_014267_010 Hb_000960_100 Hb_000960_100 Hb_001967_030--Hb_000960_100 Hb_001967_030--Hb_000890_050 Hb_183963_030 Hb_183963_030 Hb_001967_030--Hb_183963_030 Hb_001967_030--Hb_000321_150 Hb_002235_300 Hb_002235_300 Hb_000977_120--Hb_002235_300 Hb_002253_080 Hb_002253_080 Hb_000977_120--Hb_002253_080 Hb_000977_120--Hb_003729_030 Hb_002615_090 Hb_002615_090 Hb_000977_120--Hb_002615_090 Hb_000025_320 Hb_000025_320 Hb_000977_120--Hb_000025_320 Hb_000012_140 Hb_000012_140 Hb_005539_090--Hb_000012_140 Hb_007576_120 Hb_007576_120 Hb_005539_090--Hb_007576_120 Hb_004483_040 Hb_004483_040 Hb_005539_090--Hb_004483_040 Hb_005539_090--Hb_000977_120 Hb_005539_090--Hb_000321_150 Hb_005539_090--Hb_000960_100 Hb_001104_190 Hb_001104_190 Hb_006117_080--Hb_001104_190 Hb_006117_080--Hb_000069_470 Hb_009150_020 Hb_009150_020 Hb_006117_080--Hb_009150_020 Hb_024185_010 Hb_024185_010 Hb_006117_080--Hb_024185_010 Hb_000260_640 Hb_000260_640 Hb_006117_080--Hb_000260_640
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.849411 2.27347 0.552202 0.342935 1.06805 1.24557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.448458 0.658748 1.19205 0.732632 1.10374

CAGE analysis