Hb_004228_050

Information

Type -
Description -
Location Contig4228: 60053-60887
Sequence    

Annotation

kegg
ID brp:103846653
description tubulin beta-6 chain
nr
ID XP_012088545.1
description PREDICTED: tubulin beta chain-like [Jatropha curcas]
swissprot
ID Q41783
description Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=1
trembl
ID M4CXF6
description Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra008903 PE=3 SV=1
Gene Ontology
ID GO:0005737
description tubulin beta-1 chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004228_050 0.0 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
2 Hb_000592_150 0.0009342104 - - Os05g0413200 [Oryza sativa Japonica Group]
3 Hb_002305_040 0.0056037195 - - TMV resistance protein N, putative [Ricinus communis]
4 Hb_075653_010 0.0065782787 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
5 Hb_002585_050 0.0099637625 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000265_040 0.0105903987 - - PREDICTED: subtilisin-like protease, partial [Prunus mume]
7 Hb_001536_070 0.0107056776 - - hypothetical protein JCGZ_20053 [Jatropha curcas]
8 Hb_107495_020 0.0114486792 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
9 Hb_006953_010 0.0142532661 - - cytochrome P450, putative [Ricinus communis]
10 Hb_002049_040 0.016335198 - - PREDICTED: protein UNUSUAL FLORAL ORGANS [Jatropha curcas]
11 Hb_182291_010 0.0174070836 - - hypothetical protein CICLE_v10029654mg [Citrus clementina]
12 Hb_007816_010 0.0176991816 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
13 Hb_004598_010 0.0186302484 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase-like 5 [Jatropha curcas]
14 Hb_001372_010 0.0189579384 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_001171_020 0.021989754 - - PREDICTED: gibberellin 3-beta-dioxygenase 3-like [Citrus sinensis]
16 Hb_002837_010 0.0226197735 - - hypothetical protein POPTR_0497s00200g [Populus trichocarpa]
17 Hb_000227_010 0.0260634799 - - hypothetical protein JCGZ_02114 [Jatropha curcas]
18 Hb_000514_010 0.0273968175 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
19 Hb_011846_020 0.0282249252 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
20 Hb_002186_150 0.0300296442 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]

Gene co-expression network

sample Hb_004228_050 Hb_004228_050 Hb_000592_150 Hb_000592_150 Hb_004228_050--Hb_000592_150 Hb_002305_040 Hb_002305_040 Hb_004228_050--Hb_002305_040 Hb_075653_010 Hb_075653_010 Hb_004228_050--Hb_075653_010 Hb_002585_050 Hb_002585_050 Hb_004228_050--Hb_002585_050 Hb_000265_040 Hb_000265_040 Hb_004228_050--Hb_000265_040 Hb_001536_070 Hb_001536_070 Hb_004228_050--Hb_001536_070 Hb_000592_150--Hb_002305_040 Hb_000592_150--Hb_075653_010 Hb_000592_150--Hb_002585_050 Hb_000592_150--Hb_000265_040 Hb_000592_150--Hb_001536_070 Hb_002305_040--Hb_075653_010 Hb_002305_040--Hb_000265_040 Hb_002305_040--Hb_001536_070 Hb_107495_020 Hb_107495_020 Hb_002305_040--Hb_107495_020 Hb_075653_010--Hb_000265_040 Hb_075653_010--Hb_001536_070 Hb_075653_010--Hb_107495_020 Hb_007816_010 Hb_007816_010 Hb_002585_050--Hb_007816_010 Hb_002837_010 Hb_002837_010 Hb_002585_050--Hb_002837_010 Hb_002585_050--Hb_002305_040 Hb_002585_050--Hb_075653_010 Hb_000265_040--Hb_001536_070 Hb_000265_040--Hb_107495_020 Hb_006953_010 Hb_006953_010 Hb_000265_040--Hb_006953_010 Hb_002049_040 Hb_002049_040 Hb_000265_040--Hb_002049_040 Hb_001536_070--Hb_107495_020 Hb_001536_070--Hb_006953_010 Hb_001536_070--Hb_002049_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.28179 0.172279 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis