Hb_004228_070

Information

Type -
Description -
Location Contig4228: 63578-66292
Sequence    

Annotation

kegg
ID pmum:103338699
description uncharacterized LOC103338699
nr
ID XP_008240155.1
description PREDICTED: uncharacterized protein LOC103338699 [Prunus mume]
swissprot
ID O29470
description Uncharacterized transporter AF_0788 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_0788 PE=3 SV=1
trembl
ID A0A061FVP7
description Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_012767 PE=4 SV=1
Gene Ontology
ID GO:0016021
description PREDICTED: uncharacterized protein LOC103338699

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41852: 64986-65716 , PASA_asmbl_41853: 63679-66269
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004228_070 0.0 - - PREDICTED: uncharacterized protein LOC103338699 [Prunus mume]
2 Hb_021576_130 0.0619604528 - - PREDICTED: chorismate mutase 2 isoform X1 [Jatropha curcas]
3 Hb_002205_150 0.072368675 - - RING-H2 finger protein ATL3C, putative [Ricinus communis]
4 Hb_003454_050 0.0750874004 - - PREDICTED: probable methyltransferase PMT14 [Jatropha curcas]
5 Hb_007123_010 0.0866779987 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
6 Hb_044653_050 0.0873837544 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
7 Hb_006922_020 0.0884456869 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
8 Hb_007221_040 0.0891418326 - - PREDICTED: probable receptor-like protein kinase At5g24010 isoform X2 [Populus euphratica]
9 Hb_142026_010 0.0912302046 - - PREDICTED: probable mannitol dehydrogenase [Jatropha curcas]
10 Hb_002490_060 0.0912788543 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
11 Hb_039075_020 0.0948098576 - - PREDICTED: uncharacterized protein LOC103331245 [Prunus mume]
12 Hb_106089_010 0.0975819585 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
13 Hb_008749_010 0.1007898175 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
14 Hb_003747_250 0.1016820815 - - PREDICTED: potassium transporter 7 isoform X2 [Elaeis guineensis]
15 Hb_003266_090 0.1019967531 - - PREDICTED: basic 7S globulin 2-like [Jatropha curcas]
16 Hb_000163_180 0.10529573 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
17 Hb_007894_120 0.1064122437 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
18 Hb_007130_020 0.1077724777 - - -
19 Hb_012539_100 0.1087307406 - - PREDICTED: putative proline-rich receptor-like protein kinase PERK11 [Jatropha curcas]
20 Hb_003581_050 0.1102177572 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-54 [Jatropha curcas]

Gene co-expression network

sample Hb_004228_070 Hb_004228_070 Hb_021576_130 Hb_021576_130 Hb_004228_070--Hb_021576_130 Hb_002205_150 Hb_002205_150 Hb_004228_070--Hb_002205_150 Hb_003454_050 Hb_003454_050 Hb_004228_070--Hb_003454_050 Hb_007123_010 Hb_007123_010 Hb_004228_070--Hb_007123_010 Hb_044653_050 Hb_044653_050 Hb_004228_070--Hb_044653_050 Hb_006922_020 Hb_006922_020 Hb_004228_070--Hb_006922_020 Hb_039075_020 Hb_039075_020 Hb_021576_130--Hb_039075_020 Hb_021576_130--Hb_007123_010 Hb_021576_130--Hb_003454_050 Hb_021576_130--Hb_002205_150 Hb_021576_130--Hb_006922_020 Hb_142026_010 Hb_142026_010 Hb_002205_150--Hb_142026_010 Hb_012539_100 Hb_012539_100 Hb_002205_150--Hb_012539_100 Hb_002205_150--Hb_003454_050 Hb_002902_040 Hb_002902_040 Hb_002205_150--Hb_002902_040 Hb_004634_030 Hb_004634_030 Hb_002205_150--Hb_004634_030 Hb_106089_010 Hb_106089_010 Hb_003454_050--Hb_106089_010 Hb_003454_050--Hb_142026_010 Hb_003454_050--Hb_002902_040 Hb_026240_020 Hb_026240_020 Hb_003454_050--Hb_026240_020 Hb_007123_010--Hb_006922_020 Hb_000103_370 Hb_000103_370 Hb_007123_010--Hb_000103_370 Hb_054926_010 Hb_054926_010 Hb_007123_010--Hb_054926_010 Hb_002490_060 Hb_002490_060 Hb_007123_010--Hb_002490_060 Hb_007130_020 Hb_007130_020 Hb_044653_050--Hb_007130_020 Hb_007894_120 Hb_007894_120 Hb_044653_050--Hb_007894_120 Hb_017491_010 Hb_017491_010 Hb_044653_050--Hb_017491_010 Hb_005365_010 Hb_005365_010 Hb_044653_050--Hb_005365_010 Hb_001301_260 Hb_001301_260 Hb_044653_050--Hb_001301_260 Hb_006922_020--Hb_002490_060 Hb_000627_040 Hb_000627_040 Hb_006922_020--Hb_000627_040 Hb_002053_180 Hb_002053_180 Hb_006922_020--Hb_002053_180 Hb_006922_020--Hb_000103_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0119927 16.6376 28.5298 30.9759 0 0.0471701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0818734 0.0644158 0.121535 5.83647 17.7802

CAGE analysis