Hb_004228_080

Information

Type -
Description -
Location Contig4228: 66565-71954
Sequence    

Annotation

kegg
ID rcu:RCOM_0161380
description phosphoethanolamine n-methyltransferase, putative (EC:2.1.1.103)
nr
ID XP_002532097.1
description phosphoethanolamine n-methyltransferase, putative [Ricinus communis]
swissprot
ID Q9FR44
description Phosphoethanolamine N-methyltransferase 1 OS=Arabidopsis thaliana GN=NMT1 PE=1 SV=1
trembl
ID B9T1H8
description Phosphoethanolamine n-methyltransferase, putative OS=Ricinus communis GN=RCOM_0161380 PE=4 SV=1
Gene Ontology
ID GO:0000234
description phosphoethanolamine n-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41854: 66482-71946 , PASA_asmbl_41855: 68787-71874
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004228_080 0.0 - - phosphoethanolamine n-methyltransferase, putative [Ricinus communis]
2 Hb_007432_030 0.1298213955 - - acyl-CoA thioesterase, putative [Ricinus communis]
3 Hb_020805_080 0.1313519892 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
4 Hb_002183_070 0.1448385804 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
5 Hb_004934_030 0.1506121544 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
6 Hb_002374_570 0.1506852579 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
7 Hb_003607_150 0.1508125581 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
8 Hb_011316_100 0.1546906457 - - PREDICTED: glycosyltransferase family 64 protein C4-like [Jatropha curcas]
9 Hb_000000_210 0.1552891922 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Jatropha curcas]
10 Hb_000331_250 0.1553267392 - - PREDICTED: mitochondrial pyruvate carrier 1 [Vitis vinifera]
11 Hb_048476_110 0.1567299267 - - PREDICTED: adagio protein 3 [Jatropha curcas]
12 Hb_008686_080 0.1576087802 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
13 Hb_003849_130 0.159027732 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
14 Hb_001328_040 0.1641851469 - - PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
15 Hb_002217_050 0.166138151 - - PREDICTED: uncharacterized protein LOC104607091 isoform X1 [Nelumbo nucifera]
16 Hb_005496_150 0.1670902848 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
17 Hb_008062_040 0.1681059607 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
18 Hb_001604_060 0.1696649553 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
19 Hb_121937_010 0.1709385033 - - hypothetical protein B456_013G261900 [Gossypium raimondii]
20 Hb_001277_070 0.1710771772 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004228_080 Hb_004228_080 Hb_007432_030 Hb_007432_030 Hb_004228_080--Hb_007432_030 Hb_020805_080 Hb_020805_080 Hb_004228_080--Hb_020805_080 Hb_002183_070 Hb_002183_070 Hb_004228_080--Hb_002183_070 Hb_004934_030 Hb_004934_030 Hb_004228_080--Hb_004934_030 Hb_002374_570 Hb_002374_570 Hb_004228_080--Hb_002374_570 Hb_003607_150 Hb_003607_150 Hb_004228_080--Hb_003607_150 Hb_001277_070 Hb_001277_070 Hb_007432_030--Hb_001277_070 Hb_007432_030--Hb_003607_150 Hb_002685_040 Hb_002685_040 Hb_007432_030--Hb_002685_040 Hb_004931_090 Hb_004931_090 Hb_007432_030--Hb_004931_090 Hb_165132_010 Hb_165132_010 Hb_007432_030--Hb_165132_010 Hb_112798_030 Hb_112798_030 Hb_007432_030--Hb_112798_030 Hb_004041_020 Hb_004041_020 Hb_020805_080--Hb_004041_020 Hb_001604_060 Hb_001604_060 Hb_020805_080--Hb_001604_060 Hb_002540_080 Hb_002540_080 Hb_020805_080--Hb_002540_080 Hb_002946_190 Hb_002946_190 Hb_020805_080--Hb_002946_190 Hb_000163_100 Hb_000163_100 Hb_020805_080--Hb_000163_100 Hb_018133_020 Hb_018133_020 Hb_020805_080--Hb_018133_020 Hb_000046_100 Hb_000046_100 Hb_002183_070--Hb_000046_100 Hb_002183_070--Hb_002374_570 Hb_003994_290 Hb_003994_290 Hb_002183_070--Hb_003994_290 Hb_002016_170 Hb_002016_170 Hb_002183_070--Hb_002016_170 Hb_000317_490 Hb_000317_490 Hb_002183_070--Hb_000317_490 Hb_021596_090 Hb_021596_090 Hb_002183_070--Hb_021596_090 Hb_000694_040 Hb_000694_040 Hb_004934_030--Hb_000694_040 Hb_004934_030--Hb_003607_150 Hb_005186_050 Hb_005186_050 Hb_004934_030--Hb_005186_050 Hb_000331_250 Hb_000331_250 Hb_004934_030--Hb_000331_250 Hb_000000_210 Hb_000000_210 Hb_004934_030--Hb_000000_210 Hb_001998_120 Hb_001998_120 Hb_004934_030--Hb_001998_120 Hb_002374_570--Hb_002016_170 Hb_118419_010 Hb_118419_010 Hb_002374_570--Hb_118419_010 Hb_001124_090 Hb_001124_090 Hb_002374_570--Hb_001124_090 Hb_000457_180 Hb_000457_180 Hb_002374_570--Hb_000457_180 Hb_001318_250 Hb_001318_250 Hb_002374_570--Hb_001318_250 Hb_003728_060 Hb_003728_060 Hb_002374_570--Hb_003728_060 Hb_003607_150--Hb_005186_050 Hb_003069_010 Hb_003069_010 Hb_003607_150--Hb_003069_010 Hb_000251_070 Hb_000251_070 Hb_003607_150--Hb_000251_070 Hb_003607_150--Hb_002685_040 Hb_007154_020 Hb_007154_020 Hb_003607_150--Hb_007154_020 Hb_028841_030 Hb_028841_030 Hb_003607_150--Hb_028841_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.13 3.81605 77.0247 25.1593 18.9721 29.2893
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
73.4054 63.6576 52.5427 11.9903 11.9787

CAGE analysis