Hb_004228_120

Information

Type -
Description -
Location Contig4228: 87233-89286
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02080g
description POPTRDRAFT_806787; hypothetical protein
nr
ID XP_002319005.2
description hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
swissprot
ID Q9LSV3
description Putative wall-associated receptor kinase-like 16 OS=Arabidopsis thaliana GN=WAKL16 PE=3 SV=1
trembl
ID B9I7Q8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02080g PE=4 SV=2
Gene Ontology
ID GO:0004672
description receptor protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41857: 87072-88239
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004228_120 0.0 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
2 Hb_001279_190 0.05840575 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
3 Hb_002687_180 0.0600385054 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
4 Hb_002552_040 0.0668451741 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
5 Hb_159809_070 0.0747837823 - - phospholipase A-2-activating protein, putative [Ricinus communis]
6 Hb_001227_120 0.0749876573 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
7 Hb_011716_010 0.0775224198 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
8 Hb_004724_390 0.0813723465 - - PREDICTED: nicalin-1-like [Populus euphratica]
9 Hb_161568_010 0.0817244633 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
10 Hb_030982_010 0.0863663098 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007483_070 0.0888657992 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
12 Hb_001250_050 0.0891783556 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
13 Hb_002028_190 0.0899159706 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
14 Hb_023313_040 0.0901148496 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
15 Hb_006120_050 0.0901816617 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
16 Hb_008289_040 0.0904930059 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
17 Hb_000739_240 0.0905338947 - - PREDICTED: armadillo repeat-containing kinesin-like protein 2 isoform X1 [Jatropha curcas]
18 Hb_000702_090 0.0905750973 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
19 Hb_000836_300 0.0917379107 - - caax prenyl protease ste24, putative [Ricinus communis]
20 Hb_002740_080 0.0923454662 - - flap endonuclease-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_004228_120 Hb_004228_120 Hb_001279_190 Hb_001279_190 Hb_004228_120--Hb_001279_190 Hb_002687_180 Hb_002687_180 Hb_004228_120--Hb_002687_180 Hb_002552_040 Hb_002552_040 Hb_004228_120--Hb_002552_040 Hb_159809_070 Hb_159809_070 Hb_004228_120--Hb_159809_070 Hb_001227_120 Hb_001227_120 Hb_004228_120--Hb_001227_120 Hb_011716_010 Hb_011716_010 Hb_004228_120--Hb_011716_010 Hb_007483_070 Hb_007483_070 Hb_001279_190--Hb_007483_070 Hb_001279_190--Hb_002687_180 Hb_001279_190--Hb_011716_010 Hb_001250_050 Hb_001250_050 Hb_001279_190--Hb_001250_050 Hb_001279_190--Hb_001227_120 Hb_002687_180--Hb_001250_050 Hb_002304_050 Hb_002304_050 Hb_002687_180--Hb_002304_050 Hb_002687_180--Hb_002552_040 Hb_005741_040 Hb_005741_040 Hb_002687_180--Hb_005741_040 Hb_000815_300 Hb_000815_300 Hb_002552_040--Hb_000815_300 Hb_002552_040--Hb_001279_190 Hb_065968_010 Hb_065968_010 Hb_002552_040--Hb_065968_010 Hb_006970_020 Hb_006970_020 Hb_002552_040--Hb_006970_020 Hb_159809_070--Hb_001227_120 Hb_000078_140 Hb_000078_140 Hb_159809_070--Hb_000078_140 Hb_079526_040 Hb_079526_040 Hb_159809_070--Hb_079526_040 Hb_159809_070--Hb_065968_010 Hb_006189_020 Hb_006189_020 Hb_159809_070--Hb_006189_020 Hb_008304_020 Hb_008304_020 Hb_159809_070--Hb_008304_020 Hb_000019_190 Hb_000019_190 Hb_001227_120--Hb_000019_190 Hb_023313_040 Hb_023313_040 Hb_001227_120--Hb_023313_040 Hb_000702_090 Hb_000702_090 Hb_001227_120--Hb_000702_090 Hb_081599_010 Hb_081599_010 Hb_001227_120--Hb_081599_010 Hb_011716_010--Hb_002687_180 Hb_011716_010--Hb_007483_070 Hb_001504_010 Hb_001504_010 Hb_011716_010--Hb_001504_010 Hb_006438_020 Hb_006438_020 Hb_011716_010--Hb_006438_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.50735 3.47643 8.93794 8.52447 3.40102 3.0828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.99162 2.59902 3.22933 5.97233 4.10404

CAGE analysis