Hb_004230_030

Information

Type -
Description -
Location Contig4230: 46287-47231
Sequence    

Annotation

kegg
ID cit:102616989
description gamma-interferon-inducible lysosomal thiol reductase-like
nr
ID KDO63234.1
description hypothetical protein CISIN_1g043871mg [Citrus sinensis]
swissprot
ID P13284
description Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=3
trembl
ID A0A067F792
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g043871mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004230_030 0.0 - - hypothetical protein CISIN_1g043871mg [Citrus sinensis]
2 Hb_000525_060 0.3044260491 - - PREDICTED: uncharacterized protein LOC104211307 [Nicotiana sylvestris]
3 Hb_008507_050 0.306273422 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like [Jatropha curcas]
4 Hb_001493_110 0.3141784989 - - hypothetical protein JCGZ_24625 [Jatropha curcas]
5 Hb_000088_210 0.319937129 - - hypothetical protein POPTR_0013s11310g [Populus trichocarpa]
6 Hb_002759_180 0.3282460745 - - PREDICTED: snakin-2-like [Jatropha curcas]
7 Hb_173902_040 0.3300061203 - - -
8 Hb_001519_070 0.3394927523 - - hypothetical protein JCGZ_09841 [Jatropha curcas]
9 Hb_153216_010 0.3466169459 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
10 Hb_167364_020 0.3499706917 - - -
11 Hb_006671_020 0.3543832464 - - hypothetical protein CISIN_1g0407181mg, partial [Citrus sinensis]
12 Hb_001810_030 0.365025297 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
13 Hb_004453_030 0.372102209 - - hypothetical protein POPTR_0006s26790g [Populus trichocarpa]
14 Hb_116195_010 0.3737386825 - - -
15 Hb_004324_020 0.3800237171 - - -
16 Hb_002876_350 0.3854148193 - - PREDICTED: gibberellin-regulated protein 9-like isoform X2 [Citrus sinensis]
17 Hb_004931_010 0.3863758271 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
18 Hb_059924_010 0.38822691 - - -
19 Hb_000866_360 0.3898680153 - - -
20 Hb_019516_020 0.3900876709 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004230_030 Hb_004230_030 Hb_000525_060 Hb_000525_060 Hb_004230_030--Hb_000525_060 Hb_008507_050 Hb_008507_050 Hb_004230_030--Hb_008507_050 Hb_001493_110 Hb_001493_110 Hb_004230_030--Hb_001493_110 Hb_000088_210 Hb_000088_210 Hb_004230_030--Hb_000088_210 Hb_002759_180 Hb_002759_180 Hb_004230_030--Hb_002759_180 Hb_173902_040 Hb_173902_040 Hb_004230_030--Hb_173902_040 Hb_000525_060--Hb_001493_110 Hb_000088_030 Hb_000088_030 Hb_000525_060--Hb_000088_030 Hb_000608_040 Hb_000608_040 Hb_000525_060--Hb_000608_040 Hb_004324_020 Hb_004324_020 Hb_000525_060--Hb_004324_020 Hb_003125_140 Hb_003125_140 Hb_000525_060--Hb_003125_140 Hb_005535_060 Hb_005535_060 Hb_000525_060--Hb_005535_060 Hb_116195_010 Hb_116195_010 Hb_008507_050--Hb_116195_010 Hb_008507_050--Hb_002759_180 Hb_008507_050--Hb_001493_110 Hb_008507_050--Hb_004324_020 Hb_142392_010 Hb_142392_010 Hb_008507_050--Hb_142392_010 Hb_005529_010 Hb_005529_010 Hb_008507_050--Hb_005529_010 Hb_000521_140 Hb_000521_140 Hb_001493_110--Hb_000521_140 Hb_006096_040 Hb_006096_040 Hb_001493_110--Hb_006096_040 Hb_001810_030 Hb_001810_030 Hb_001493_110--Hb_001810_030 Hb_001493_110--Hb_173902_040 Hb_003751_060 Hb_003751_060 Hb_001493_110--Hb_003751_060 Hb_001519_070 Hb_001519_070 Hb_000088_210--Hb_001519_070 Hb_000861_010 Hb_000861_010 Hb_000088_210--Hb_000861_010 Hb_001427_140 Hb_001427_140 Hb_000088_210--Hb_001427_140 Hb_000088_210--Hb_173902_040 Hb_127008_010 Hb_127008_010 Hb_000088_210--Hb_127008_010 Hb_000099_230 Hb_000099_230 Hb_000088_210--Hb_000099_230 Hb_002759_180--Hb_005529_010 Hb_000933_050 Hb_000933_050 Hb_002759_180--Hb_000933_050 Hb_017170_020 Hb_017170_020 Hb_002759_180--Hb_017170_020 Hb_000001_110 Hb_000001_110 Hb_002759_180--Hb_000001_110 Hb_000098_190 Hb_000098_190 Hb_002759_180--Hb_000098_190 Hb_052135_030 Hb_052135_030 Hb_002759_180--Hb_052135_030 Hb_003702_040 Hb_003702_040 Hb_173902_040--Hb_003702_040 Hb_173902_040--Hb_006096_040 Hb_001519_180 Hb_001519_180 Hb_173902_040--Hb_001519_180 Hb_005545_030 Hb_005545_030 Hb_173902_040--Hb_005545_030 Hb_000789_100 Hb_000789_100 Hb_173902_040--Hb_000789_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.139567 0 0.300076 0 0.35284 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.108219 0.255128 0 0.0699536 0

CAGE analysis