Hb_004230_040

Information

Type -
Description -
Location Contig4230: 50536-51288
Sequence    

Annotation

kegg
ID rcu:RCOM_0847640
description hypothetical protein
nr
ID XP_002526666.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SKZ7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0847640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41859: 50463-51349
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004230_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002028_220 0.1207607208 - - aminoadipic semialdehyde synthase, putative [Ricinus communis]
3 Hb_000390_150 0.134352006 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105632469 [Jatropha curcas]
4 Hb_000923_050 0.136168895 - - PREDICTED: transcription factor bHLH113 isoform X1 [Jatropha curcas]
5 Hb_001902_190 0.1391308298 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
6 Hb_028872_060 0.1569310386 - - PREDICTED: ankyrin-3-like [Jatropha curcas]
7 Hb_002400_400 0.1575810734 - - PREDICTED: topless-related protein 1-like isoform X3 [Jatropha curcas]
8 Hb_001472_120 0.1601359816 - - -
9 Hb_000703_250 0.1615982937 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Jatropha curcas]
10 Hb_000317_400 0.1630748015 transcription factor TF Family: zf-HD conserved hypothetical protein [Ricinus communis]
11 Hb_000329_650 0.1647046693 - - hypothetical protein POPTR_0014s056001g, partial [Populus trichocarpa]
12 Hb_138585_110 0.1647114339 - - -
13 Hb_000796_250 0.1657038219 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
14 Hb_000640_300 0.1661685778 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
15 Hb_000116_230 0.1667196999 - - -
16 Hb_087596_010 0.1677907918 - - PREDICTED: disease resistance protein RPS4-like [Jatropha curcas]
17 Hb_004800_070 0.1680444693 - - -
18 Hb_115241_010 0.1684304999 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
19 Hb_000087_050 0.1710226893 - - hypothetical protein JCGZ_16227 [Jatropha curcas]
20 Hb_000016_100 0.1715946658 transcription factor TF Family: TCP PREDICTED: transcription factor TCP19 [Jatropha curcas]

Gene co-expression network

sample Hb_004230_040 Hb_004230_040 Hb_002028_220 Hb_002028_220 Hb_004230_040--Hb_002028_220 Hb_000390_150 Hb_000390_150 Hb_004230_040--Hb_000390_150 Hb_000923_050 Hb_000923_050 Hb_004230_040--Hb_000923_050 Hb_001902_190 Hb_001902_190 Hb_004230_040--Hb_001902_190 Hb_028872_060 Hb_028872_060 Hb_004230_040--Hb_028872_060 Hb_002400_400 Hb_002400_400 Hb_004230_040--Hb_002400_400 Hb_003044_030 Hb_003044_030 Hb_002028_220--Hb_003044_030 Hb_001472_120 Hb_001472_120 Hb_002028_220--Hb_001472_120 Hb_000252_170 Hb_000252_170 Hb_002028_220--Hb_000252_170 Hb_002391_270 Hb_002391_270 Hb_002028_220--Hb_002391_270 Hb_006816_200 Hb_006816_200 Hb_002028_220--Hb_006816_200 Hb_000390_150--Hb_002400_400 Hb_000016_100 Hb_000016_100 Hb_000390_150--Hb_000016_100 Hb_002007_240 Hb_002007_240 Hb_000390_150--Hb_002007_240 Hb_000230_520 Hb_000230_520 Hb_000390_150--Hb_000230_520 Hb_000390_150--Hb_001472_120 Hb_011828_020 Hb_011828_020 Hb_000923_050--Hb_011828_020 Hb_000329_650 Hb_000329_650 Hb_000923_050--Hb_000329_650 Hb_000395_080 Hb_000395_080 Hb_000923_050--Hb_000395_080 Hb_007441_230 Hb_007441_230 Hb_000923_050--Hb_007441_230 Hb_000696_340 Hb_000696_340 Hb_000923_050--Hb_000696_340 Hb_002333_080 Hb_002333_080 Hb_000923_050--Hb_002333_080 Hb_000227_060 Hb_000227_060 Hb_001902_190--Hb_000227_060 Hb_000451_070 Hb_000451_070 Hb_001902_190--Hb_000451_070 Hb_115241_010 Hb_115241_010 Hb_001902_190--Hb_115241_010 Hb_002961_060 Hb_002961_060 Hb_001902_190--Hb_002961_060 Hb_002042_130 Hb_002042_130 Hb_001902_190--Hb_002042_130 Hb_001150_040 Hb_001150_040 Hb_028872_060--Hb_001150_040 Hb_004242_190 Hb_004242_190 Hb_028872_060--Hb_004242_190 Hb_000640_300 Hb_000640_300 Hb_028872_060--Hb_000640_300 Hb_000009_620 Hb_000009_620 Hb_028872_060--Hb_000009_620 Hb_155123_010 Hb_155123_010 Hb_028872_060--Hb_155123_010 Hb_011512_090 Hb_011512_090 Hb_002400_400--Hb_011512_090 Hb_002400_400--Hb_002007_240 Hb_000244_220 Hb_000244_220 Hb_002400_400--Hb_000244_220 Hb_005214_090 Hb_005214_090 Hb_002400_400--Hb_005214_090 Hb_000200_280 Hb_000200_280 Hb_002400_400--Hb_000200_280 Hb_000976_040 Hb_000976_040 Hb_002400_400--Hb_000976_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.86576 6.99469 0.744072 1.78997 3.39546 4.53176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.65 6.79555 3.92364 9.86437 0.333687

CAGE analysis