Hb_004232_010

Information

Type -
Description -
Location Contig4232: 27873-29794
Sequence    

Annotation

kegg
ID rcu:RCOM_1158800
description hypothetical protein
nr
ID XP_012093007.1
description PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067J8M2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41864: 27873-29803 , PASA_asmbl_41865: 27961-28080 , PASA_asmbl_41866: 28702-29161
cDNA
(Sanger)
(ID:Location)		 004_A14.ab1: 27873-29436 , 005_P06.ab1: 27903-29484 , 008_B14.ab1: 27875-29385 , 035_K23.ab1: 27873-29449

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004232_010 0.0 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
2 Hb_011609_030 0.0814991531 - - conserved hypothetical protein 13 [Hevea brasiliensis]
3 Hb_000500_290 0.0926092905 - - bromodomain-containing protein, putative [Ricinus communis]
4 Hb_005741_020 0.0963003546 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
5 Hb_000714_020 0.0975501683 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
6 Hb_004070_030 0.0976249202 - - PREDICTED: phosphatidate cytidylyltransferase, mitochondrial isoform X2 [Jatropha curcas]
7 Hb_000282_150 0.0993653326 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
8 Hb_005271_070 0.1023285875 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
9 Hb_001140_080 0.1050901531 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
10 Hb_000270_450 0.1056291026 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
11 Hb_002660_140 0.1088009415 - - hypothetical protein POPTR_0006s13060g [Populus trichocarpa]
12 Hb_001348_140 0.112175258 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000176_140 0.1156461315 - - PREDICTED: bystin [Jatropha curcas]
14 Hb_001195_100 0.1170827239 - - PREDICTED: uncharacterized protein LOC105633812 [Jatropha curcas]
15 Hb_001956_120 0.1174854855 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000320_440 0.1174894111 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
17 Hb_005028_010 0.1180985287 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
18 Hb_002078_430 0.1185245575 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
19 Hb_004374_010 0.1185518319 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
20 Hb_011930_010 0.1188792924 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_004232_010 Hb_004232_010 Hb_011609_030 Hb_011609_030 Hb_004232_010--Hb_011609_030 Hb_000500_290 Hb_000500_290 Hb_004232_010--Hb_000500_290 Hb_005741_020 Hb_005741_020 Hb_004232_010--Hb_005741_020 Hb_000714_020 Hb_000714_020 Hb_004232_010--Hb_000714_020 Hb_004070_030 Hb_004070_030 Hb_004232_010--Hb_004070_030 Hb_000282_150 Hb_000282_150 Hb_004232_010--Hb_000282_150 Hb_011609_030--Hb_000714_020 Hb_001623_370 Hb_001623_370 Hb_011609_030--Hb_001623_370 Hb_011609_030--Hb_005741_020 Hb_011930_010 Hb_011930_010 Hb_011609_030--Hb_011930_010 Hb_001956_120 Hb_001956_120 Hb_011609_030--Hb_001956_120 Hb_000500_290--Hb_000282_150 Hb_005271_070 Hb_005271_070 Hb_000500_290--Hb_005271_070 Hb_001348_140 Hb_001348_140 Hb_000500_290--Hb_001348_140 Hb_009615_110 Hb_009615_110 Hb_000500_290--Hb_009615_110 Hb_011537_040 Hb_011537_040 Hb_000500_290--Hb_011537_040 Hb_005741_020--Hb_005271_070 Hb_005741_020--Hb_001623_370 Hb_005741_020--Hb_000714_020 Hb_005741_020--Hb_001956_120 Hb_000714_020--Hb_001623_370 Hb_001493_100 Hb_001493_100 Hb_000714_020--Hb_001493_100 Hb_001514_020 Hb_001514_020 Hb_000714_020--Hb_001514_020 Hb_002619_010 Hb_002619_010 Hb_000714_020--Hb_002619_010 Hb_004374_010 Hb_004374_010 Hb_000714_020--Hb_004374_010 Hb_004070_030--Hb_005741_020 Hb_000442_100 Hb_000442_100 Hb_004070_030--Hb_000442_100 Hb_004070_030--Hb_011609_030 Hb_004070_030--Hb_000714_020 Hb_004070_030--Hb_005271_070 Hb_001140_080 Hb_001140_080 Hb_000282_150--Hb_001140_080 Hb_000282_150--Hb_011537_040 Hb_000270_450 Hb_000270_450 Hb_000282_150--Hb_000270_450 Hb_012807_120 Hb_012807_120 Hb_000282_150--Hb_012807_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2446.83 607.202 173.837 133.532 1377.1 2181.07
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1592.03 626.935 493.992 229.811 83.4292

CAGE analysis