Hb_004235_020

Information

Type -
Description -
Location Contig4235: 7002-11135
Sequence    

Annotation

kegg
ID pmum:103322555
description uncharacterized LOC103322555
nr
ID XP_008222701.1
description PREDICTED: uncharacterized protein LOC103322555 [Prunus mume]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004235_020 0.0 - - PREDICTED: uncharacterized protein LOC103322555 [Prunus mume]
2 Hb_009888_010 0.0873933884 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_143398_020 0.1180836017 - - PREDICTED: 21 kDa protein [Populus euphratica]
4 Hb_032717_090 0.1618613247 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008680_010 0.1724001565 - - -
6 Hb_065395_020 0.174089465 - - receptor-kinase, putative [Ricinus communis]
7 Hb_004445_030 0.216250164 - - conserved hypothetical protein [Ricinus communis]
8 Hb_029238_030 0.2244356206 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
9 Hb_004052_130 0.2246255068 - - PREDICTED: cytochrome P450 78A5 [Jatropha curcas]
10 Hb_005352_010 0.2311713705 - - -
11 Hb_047923_030 0.2387356628 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
12 Hb_002576_010 0.2410049968 - - -
13 Hb_027522_020 0.2421328223 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_003900_040 0.2449358011 - - hypothetical protein [Lotus japonicus]
15 Hb_013420_040 0.2460625378 - - unnamed protein product [Vitis vinifera]
16 Hb_054127_020 0.2465662317 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
17 Hb_023547_010 0.2467749837 - - protein binding protein, putative [Ricinus communis]
18 Hb_180214_010 0.2496844514 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
19 Hb_022599_010 0.2503539201 - - Uncharacterized protein TCM_010507 [Theobroma cacao]
20 Hb_001490_020 0.2509645864 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]

Gene co-expression network

sample Hb_004235_020 Hb_004235_020 Hb_009888_010 Hb_009888_010 Hb_004235_020--Hb_009888_010 Hb_143398_020 Hb_143398_020 Hb_004235_020--Hb_143398_020 Hb_032717_090 Hb_032717_090 Hb_004235_020--Hb_032717_090 Hb_008680_010 Hb_008680_010 Hb_004235_020--Hb_008680_010 Hb_065395_020 Hb_065395_020 Hb_004235_020--Hb_065395_020 Hb_004445_030 Hb_004445_030 Hb_004235_020--Hb_004445_030 Hb_009888_010--Hb_143398_020 Hb_005352_010 Hb_005352_010 Hb_009888_010--Hb_005352_010 Hb_027522_020 Hb_027522_020 Hb_009888_010--Hb_027522_020 Hb_123951_010 Hb_123951_010 Hb_009888_010--Hb_123951_010 Hb_022599_010 Hb_022599_010 Hb_009888_010--Hb_022599_010 Hb_143398_020--Hb_065395_020 Hb_001021_050 Hb_001021_050 Hb_143398_020--Hb_001021_050 Hb_143398_020--Hb_032717_090 Hb_143398_020--Hb_123951_010 Hb_180214_010 Hb_180214_010 Hb_032717_090--Hb_180214_010 Hb_003900_040 Hb_003900_040 Hb_032717_090--Hb_003900_040 Hb_003169_040 Hb_003169_040 Hb_032717_090--Hb_003169_040 Hb_032717_090--Hb_008680_010 Hb_001383_080 Hb_001383_080 Hb_032717_090--Hb_001383_080 Hb_004052_130 Hb_004052_130 Hb_008680_010--Hb_004052_130 Hb_017640_010 Hb_017640_010 Hb_008680_010--Hb_017640_010 Hb_008680_010--Hb_004445_030 Hb_144838_010 Hb_144838_010 Hb_008680_010--Hb_144838_010 Hb_002598_030 Hb_002598_030 Hb_008680_010--Hb_002598_030 Hb_004981_010 Hb_004981_010 Hb_065395_020--Hb_004981_010 Hb_065395_020--Hb_009888_010 Hb_003717_020 Hb_003717_020 Hb_065395_020--Hb_003717_020 Hb_004678_070 Hb_004678_070 Hb_065395_020--Hb_004678_070 Hb_054127_020 Hb_054127_020 Hb_004445_030--Hb_054127_020 Hb_047923_030 Hb_047923_030 Hb_004445_030--Hb_047923_030 Hb_002576_010 Hb_002576_010 Hb_004445_030--Hb_002576_010 Hb_004445_030--Hb_004052_130 Hb_009355_010 Hb_009355_010 Hb_004445_030--Hb_009355_010 Hb_004445_030--Hb_144838_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0233036 0 0 0 0.0205456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0083652 0.176612

CAGE analysis