Hb_004235_030

Information

Type -
Description -
Location Contig4235: 15002-18401
Sequence    

Annotation

kegg
ID rcu:RCOM_1504540
description alpha-2,8-sialyltransferase 8b, putative
nr
ID XP_002511111.1
description alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
swissprot
ID Q11200
description CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 OS=Gallus gallus GN=ST3GAL1 PE=2 SV=1
trembl
ID B9RA86
description Alpha-2,8-sialyltransferase 8b, putative OS=Ricinus communis GN=RCOM_1504540 PE=4 SV=1
Gene Ontology
ID GO:0012505
description alpha- -sialyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004235_030 0.0 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
2 Hb_002660_050 0.1245538064 - - PREDICTED: uncharacterized protein LOC105642218 [Jatropha curcas]
3 Hb_028420_020 0.1377948531 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
4 Hb_000927_020 0.1434510671 - - synaptosomal associated protein, putative [Ricinus communis]
5 Hb_003688_110 0.1527712225 - - -
6 Hb_005016_050 0.1559820378 - - -
7 Hb_004899_050 0.1675328961 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
8 Hb_002259_150 0.1685509904 - - BnaC04g40780D [Brassica napus]
9 Hb_000641_020 0.1699607379 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
10 Hb_000030_220 0.1708005546 - - PREDICTED: uncharacterized protein LOC105650405 [Jatropha curcas]
11 Hb_004060_030 0.1708811168 - - PREDICTED: primase homolog protein [Jatropha curcas]
12 Hb_000157_100 0.1709511012 - - hypothetical protein B456_007G083500 [Gossypium raimondii]
13 Hb_007763_060 0.1739064638 - - BnaA02g23510D [Brassica napus]
14 Hb_001504_080 0.1759050589 - - golgi snare 11 protein, putative [Ricinus communis]
15 Hb_009117_030 0.1792127995 - - PREDICTED: histidine protein methyltransferase 1 homolog isoform X2 [Jatropha curcas]
16 Hb_003912_090 0.1793148141 - - peptidyl-tRNA hydrolase, putative [Ricinus communis]
17 Hb_005615_080 0.1796035722 - - PREDICTED: uncharacterized protein LOC105649609 [Jatropha curcas]
18 Hb_000648_030 0.1797065259 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
19 Hb_002197_030 0.1805408107 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X2 [Jatropha curcas]
20 Hb_001377_180 0.1818331591 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004235_030 Hb_004235_030 Hb_002660_050 Hb_002660_050 Hb_004235_030--Hb_002660_050 Hb_028420_020 Hb_028420_020 Hb_004235_030--Hb_028420_020 Hb_000927_020 Hb_000927_020 Hb_004235_030--Hb_000927_020 Hb_003688_110 Hb_003688_110 Hb_004235_030--Hb_003688_110 Hb_005016_050 Hb_005016_050 Hb_004235_030--Hb_005016_050 Hb_004899_050 Hb_004899_050 Hb_004235_030--Hb_004899_050 Hb_001504_080 Hb_001504_080 Hb_002660_050--Hb_001504_080 Hb_002660_050--Hb_004899_050 Hb_002660_050--Hb_028420_020 Hb_002112_040 Hb_002112_040 Hb_002660_050--Hb_002112_040 Hb_001998_230 Hb_001998_230 Hb_002660_050--Hb_001998_230 Hb_003912_090 Hb_003912_090 Hb_028420_020--Hb_003912_090 Hb_021238_050 Hb_021238_050 Hb_028420_020--Hb_021238_050 Hb_005862_010 Hb_005862_010 Hb_028420_020--Hb_005862_010 Hb_020665_040 Hb_020665_040 Hb_028420_020--Hb_020665_040 Hb_028420_020--Hb_005016_050 Hb_003038_210 Hb_003038_210 Hb_028420_020--Hb_003038_210 Hb_000927_020--Hb_028420_020 Hb_000927_020--Hb_005016_050 Hb_000567_030 Hb_000567_030 Hb_000927_020--Hb_000567_030 Hb_000927_020--Hb_005862_010 Hb_000795_060 Hb_000795_060 Hb_000927_020--Hb_000795_060 Hb_001454_260 Hb_001454_260 Hb_000927_020--Hb_001454_260 Hb_025190_010 Hb_025190_010 Hb_003688_110--Hb_025190_010 Hb_002200_050 Hb_002200_050 Hb_003688_110--Hb_002200_050 Hb_007763_060 Hb_007763_060 Hb_003688_110--Hb_007763_060 Hb_041205_010 Hb_041205_010 Hb_003688_110--Hb_041205_010 Hb_005085_030 Hb_005085_030 Hb_003688_110--Hb_005085_030 Hb_009117_030 Hb_009117_030 Hb_005016_050--Hb_009117_030 Hb_023732_090 Hb_023732_090 Hb_005016_050--Hb_023732_090 Hb_027472_150 Hb_027472_150 Hb_005016_050--Hb_027472_150 Hb_005016_050--Hb_003912_090 Hb_003333_060 Hb_003333_060 Hb_005016_050--Hb_003333_060 Hb_000193_270 Hb_000193_270 Hb_005016_050--Hb_000193_270 Hb_007002_030 Hb_007002_030 Hb_004899_050--Hb_007002_030 Hb_000053_100 Hb_000053_100 Hb_004899_050--Hb_000053_100 Hb_002596_040 Hb_002596_040 Hb_004899_050--Hb_002596_040 Hb_002893_080 Hb_002893_080 Hb_004899_050--Hb_002893_080 Hb_007317_180 Hb_007317_180 Hb_004899_050--Hb_007317_180 Hb_000994_120 Hb_000994_120 Hb_004899_050--Hb_000994_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.754797 0.189881 0.122887 1.41854 0.831616 3.80898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.48971 1.58146 0.848639 1.01338 1.22521

CAGE analysis