Hb_004235_040

Information

Type transcription factor
Description TF Family: bHLH
Location Contig4235: 25116-26808
Sequence    

Annotation

kegg
ID tcc:TCM_014729
description Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
nr
ID XP_012090613.1
description PREDICTED: transcription factor bHLH137 isoform X1 [Jatropha curcas]
swissprot
ID Q93W88
description Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1
trembl
ID A0A067JRD3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26386 PE=4 SV=1
Gene Ontology
ID GO:0003677
description basic helix-loop-helix dna-binding superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41869: 24723-25406 , PASA_asmbl_41870: 26490-26616
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004235_040 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH137 isoform X1 [Jatropha curcas]
2 Hb_000392_080 0.1131035382 - - hypothetical protein glysoja_034865 [Glycine soja]
3 Hb_002757_020 0.1236347059 - - -
4 Hb_014508_020 0.1338960136 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
5 Hb_000352_210 0.1344333308 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
6 Hb_002028_250 0.1361919062 - - Alpha-aminoadipic semialdehyde synthase, mitochondrial [Crassostrea gigas]
7 Hb_010327_040 0.1383952789 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
8 Hb_004396_020 0.1406052727 - - SAUR-like auxin-responsive protein family [Theobroma cacao]
9 Hb_001369_490 0.1423579583 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 33 [Jatropha curcas]
10 Hb_097213_010 0.1428757014 - - PREDICTED: cytochrome P450 714C2-like [Populus euphratica]
11 Hb_000375_210 0.143002229 - - -
12 Hb_000331_380 0.1434999302 - - hypothetical protein POPTR_0012s09560g [Populus trichocarpa]
13 Hb_015447_010 0.1442836929 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
14 Hb_006198_160 0.14431146 - - hypothetical protein POPTR_0002s24290g [Populus trichocarpa]
15 Hb_003849_210 0.14438536 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
16 Hb_010128_140 0.1445026577 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
17 Hb_101724_010 0.1445110751 - - glutamate receptor family protein [Populus trichocarpa]
18 Hb_093541_010 0.1445729903 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000087_110 0.1447092898 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001552_010 0.1447330787 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004235_040 Hb_004235_040 Hb_000392_080 Hb_000392_080 Hb_004235_040--Hb_000392_080 Hb_002757_020 Hb_002757_020 Hb_004235_040--Hb_002757_020 Hb_014508_020 Hb_014508_020 Hb_004235_040--Hb_014508_020 Hb_000352_210 Hb_000352_210 Hb_004235_040--Hb_000352_210 Hb_002028_250 Hb_002028_250 Hb_004235_040--Hb_002028_250 Hb_010327_040 Hb_010327_040 Hb_004235_040--Hb_010327_040 Hb_000392_080--Hb_000352_210 Hb_004396_020 Hb_004396_020 Hb_000392_080--Hb_004396_020 Hb_000331_380 Hb_000331_380 Hb_000392_080--Hb_000331_380 Hb_000392_080--Hb_010327_040 Hb_000392_080--Hb_002757_020 Hb_024066_020 Hb_024066_020 Hb_000392_080--Hb_024066_020 Hb_000375_210 Hb_000375_210 Hb_002757_020--Hb_000375_210 Hb_002757_020--Hb_002028_250 Hb_000389_120 Hb_000389_120 Hb_002757_020--Hb_000389_120 Hb_002757_020--Hb_014508_020 Hb_000431_040 Hb_000431_040 Hb_002757_020--Hb_000431_040 Hb_005914_190 Hb_005914_190 Hb_002757_020--Hb_005914_190 Hb_014508_020--Hb_002028_250 Hb_014508_020--Hb_000389_120 Hb_099538_020 Hb_099538_020 Hb_014508_020--Hb_099538_020 Hb_010261_070 Hb_010261_070 Hb_014508_020--Hb_010261_070 Hb_014508_020--Hb_005914_190 Hb_002289_160 Hb_002289_160 Hb_014508_020--Hb_002289_160 Hb_000352_210--Hb_000331_380 Hb_000431_050 Hb_000431_050 Hb_000352_210--Hb_000431_050 Hb_000352_210--Hb_004396_020 Hb_002073_210 Hb_002073_210 Hb_000352_210--Hb_002073_210 Hb_003152_010 Hb_003152_010 Hb_000352_210--Hb_003152_010 Hb_002028_250--Hb_000375_210 Hb_002028_250--Hb_000389_120 Hb_002028_250--Hb_002289_160 Hb_027136_030 Hb_027136_030 Hb_002028_250--Hb_027136_030 Hb_000802_040 Hb_000802_040 Hb_010327_040--Hb_000802_040 Hb_010327_040--Hb_004396_020 Hb_010327_040--Hb_024066_020 Hb_007007_140 Hb_007007_140 Hb_010327_040--Hb_007007_140 Hb_004693_040 Hb_004693_040 Hb_010327_040--Hb_004693_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.495965 3.98516 0 0.0453543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0692789 0 0.0770208

CAGE analysis