Hb_004235_080

Information

Type -
Description -
Location Contig4235: 63061-69655
Sequence    

Annotation

kegg
ID rcu:RCOM_1504190
description hypothetical protein
nr
ID XP_012090607.1
description PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
swissprot
ID Q8RWD5
description Coiled-coil domain-containing protein SCD2 OS=Arabidopsis thaliana GN=SCD2 PE=1 SV=1
trembl
ID A0A067JF57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26382 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41873: 60965-62217 , PASA_asmbl_41874: 63431-64262 , PASA_asmbl_41875: 63220-63946 , PASA_asmbl_41878: 68163-69581
cDNA
(Sanger)
(ID:Location)		 006_I22.ab1: 61024-62215 , 011_J04.ab1: 61017-62095 , 015_I12.ab1: 60965-62088 , 017_H02.ab1: 60965-62132 , 020_A04.ab1: 60971-62117 , 024_N24.ab1: 61033-62139 , 027_A01.ab1: 60965-62128 , 043_G02.ab1: 61017-62091 , 046_A07.ab1: 60965-62128 , 047_L05.ab1: 61004-62176

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004235_080 0.0 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
2 Hb_000923_080 0.0439752847 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
3 Hb_008159_020 0.0521424563 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
4 Hb_002375_010 0.0637523075 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
5 Hb_004209_020 0.0643101486 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
6 Hb_003097_170 0.0660250117 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
7 Hb_104061_020 0.0690373685 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
8 Hb_002784_020 0.0705436499 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
9 Hb_164544_010 0.0716098749 - - PREDICTED: protein arginine N-methyltransferase 1.5 isoform X2 [Jatropha curcas]
10 Hb_000390_320 0.0729125553 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
11 Hb_004429_100 0.0729860983 - - PREDICTED: asparagine synthetase domain-containing protein 1 [Jatropha curcas]
12 Hb_017862_020 0.0763191992 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
13 Hb_000656_380 0.0764423754 - - PREDICTED: exportin-T [Jatropha curcas]
14 Hb_000190_120 0.0778836682 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
15 Hb_183612_040 0.0782685146 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
16 Hb_010053_030 0.0789509246 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
17 Hb_001347_040 0.0803427328 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
18 Hb_007576_110 0.08125251 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
19 Hb_131646_010 0.08171781 - - protein arginine n-methyltransferase, putative [Ricinus communis]
20 Hb_004954_070 0.0826406538 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]

Gene co-expression network

sample Hb_004235_080 Hb_004235_080 Hb_000923_080 Hb_000923_080 Hb_004235_080--Hb_000923_080 Hb_008159_020 Hb_008159_020 Hb_004235_080--Hb_008159_020 Hb_002375_010 Hb_002375_010 Hb_004235_080--Hb_002375_010 Hb_004209_020 Hb_004209_020 Hb_004235_080--Hb_004209_020 Hb_003097_170 Hb_003097_170 Hb_004235_080--Hb_003097_170 Hb_104061_020 Hb_104061_020 Hb_004235_080--Hb_104061_020 Hb_010053_030 Hb_010053_030 Hb_000923_080--Hb_010053_030 Hb_000648_100 Hb_000648_100 Hb_000923_080--Hb_000648_100 Hb_000923_080--Hb_004209_020 Hb_000923_080--Hb_008159_020 Hb_000923_080--Hb_104061_020 Hb_000179_030 Hb_000179_030 Hb_008159_020--Hb_000179_030 Hb_000768_110 Hb_000768_110 Hb_008159_020--Hb_000768_110 Hb_006252_040 Hb_006252_040 Hb_008159_020--Hb_006252_040 Hb_002823_030 Hb_002823_030 Hb_008159_020--Hb_002823_030 Hb_005914_060 Hb_005914_060 Hb_008159_020--Hb_005914_060 Hb_000390_320 Hb_000390_320 Hb_002375_010--Hb_000390_320 Hb_004195_200 Hb_004195_200 Hb_002375_010--Hb_004195_200 Hb_000347_070 Hb_000347_070 Hb_002375_010--Hb_000347_070 Hb_007576_110 Hb_007576_110 Hb_002375_010--Hb_007576_110 Hb_000617_180 Hb_000617_180 Hb_002375_010--Hb_000617_180 Hb_002784_020 Hb_002784_020 Hb_002375_010--Hb_002784_020 Hb_002835_230 Hb_002835_230 Hb_004209_020--Hb_002835_230 Hb_131646_010 Hb_131646_010 Hb_004209_020--Hb_131646_010 Hb_004785_100 Hb_004785_100 Hb_004209_020--Hb_004785_100 Hb_004209_020--Hb_002375_010 Hb_003097_170--Hb_000923_080 Hb_000221_250 Hb_000221_250 Hb_003097_170--Hb_000221_250 Hb_000020_150 Hb_000020_150 Hb_003097_170--Hb_000020_150 Hb_004429_100 Hb_004429_100 Hb_003097_170--Hb_004429_100 Hb_001030_110 Hb_001030_110 Hb_003097_170--Hb_001030_110 Hb_002107_070 Hb_002107_070 Hb_104061_020--Hb_002107_070 Hb_000579_230 Hb_000579_230 Hb_104061_020--Hb_000579_230 Hb_002329_040 Hb_002329_040 Hb_104061_020--Hb_002329_040 Hb_104061_020--Hb_010053_030 Hb_000740_100 Hb_000740_100 Hb_104061_020--Hb_000740_100 Hb_009175_020 Hb_009175_020 Hb_104061_020--Hb_009175_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9904 13.5061 10.307 7.08119 16.7458 18.3889
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.84711 9.89344 9.03788 15.7436 6.64854

CAGE analysis