Hb_004236_050

Information

Type -
Description -
Location Contig4236: 41494-57162
Sequence    

Annotation

kegg
ID rcu:RCOM_0525580
description pearli, putative
nr
ID XP_012084811.1
description PREDICTED: nipped-B-like protein A [Jatropha curcas]
swissprot
ID F5HSE3
description Nipped-B-like protein A OS=Danio rerio GN=nipbla PE=2 SV=1
trembl
ID B9SJD1
description Pearli, putative OS=Ricinus communis GN=RCOM_0525580 PE=4 SV=1
Gene Ontology
ID GO:0008270
description nipped-b-like protein isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41883: 41648-44357 , PASA_asmbl_41884: 49110-50109 , PASA_asmbl_41885: 50140-50909 , PASA_asmbl_41887: 51361-53634
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004236_050 0.0 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
2 Hb_003929_280 0.040803614 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
3 Hb_004837_180 0.0533009326 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
4 Hb_000645_170 0.0601192933 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003927_040 0.0619485606 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
6 Hb_007590_020 0.0627579485 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
7 Hb_012305_030 0.0661954793 - - hypothetical protein JCGZ_18979 [Jatropha curcas]
8 Hb_000329_370 0.0666861342 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
9 Hb_012194_030 0.067157903 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
10 Hb_002217_110 0.0676950556 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
11 Hb_003030_060 0.0728053051 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
12 Hb_012384_030 0.0731265976 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Jatropha curcas]
13 Hb_001089_030 0.0736311454 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
14 Hb_140049_040 0.073678694 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
15 Hb_005489_020 0.0747670526 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005867_070 0.0751281496 - - DNA binding protein, putative [Ricinus communis]
17 Hb_001227_030 0.0755237326 - - PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1 [Jatropha curcas]
18 Hb_000289_040 0.0755728301 - - Poly(A) polymerase alpha, putative [Ricinus communis]
19 Hb_162275_050 0.0759923987 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
20 Hb_002085_030 0.0776037246 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004236_050 Hb_004236_050 Hb_003929_280 Hb_003929_280 Hb_004236_050--Hb_003929_280 Hb_004837_180 Hb_004837_180 Hb_004236_050--Hb_004837_180 Hb_000645_170 Hb_000645_170 Hb_004236_050--Hb_000645_170 Hb_003927_040 Hb_003927_040 Hb_004236_050--Hb_003927_040 Hb_007590_020 Hb_007590_020 Hb_004236_050--Hb_007590_020 Hb_012305_030 Hb_012305_030 Hb_004236_050--Hb_012305_030 Hb_003929_280--Hb_004837_180 Hb_003929_280--Hb_003927_040 Hb_012384_030 Hb_012384_030 Hb_003929_280--Hb_012384_030 Hb_000803_070 Hb_000803_070 Hb_003929_280--Hb_000803_070 Hb_002217_110 Hb_002217_110 Hb_003929_280--Hb_002217_110 Hb_005867_070 Hb_005867_070 Hb_004837_180--Hb_005867_070 Hb_004837_180--Hb_007590_020 Hb_001225_040 Hb_001225_040 Hb_004837_180--Hb_001225_040 Hb_004837_180--Hb_002217_110 Hb_000645_170--Hb_003927_040 Hb_008568_020 Hb_008568_020 Hb_000645_170--Hb_008568_020 Hb_001430_080 Hb_001430_080 Hb_000645_170--Hb_001430_080 Hb_001636_050 Hb_001636_050 Hb_000645_170--Hb_001636_050 Hb_154580_010 Hb_154580_010 Hb_000645_170--Hb_154580_010 Hb_001751_140 Hb_001751_140 Hb_003927_040--Hb_001751_140 Hb_060094_020 Hb_060094_020 Hb_003927_040--Hb_060094_020 Hb_003927_040--Hb_008568_020 Hb_140049_040 Hb_140049_040 Hb_003927_040--Hb_140049_040 Hb_007590_020--Hb_005867_070 Hb_001089_030 Hb_001089_030 Hb_007590_020--Hb_001089_030 Hb_005730_040 Hb_005730_040 Hb_007590_020--Hb_005730_040 Hb_007590_020--Hb_001225_040 Hb_002085_030 Hb_002085_030 Hb_012305_030--Hb_002085_030 Hb_012305_030--Hb_140049_040 Hb_004976_010 Hb_004976_010 Hb_012305_030--Hb_004976_010 Hb_000914_120 Hb_000914_120 Hb_012305_030--Hb_000914_120 Hb_012194_030 Hb_012194_030 Hb_012305_030--Hb_012194_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.45283 8.52007 6.51949 3.53726 6.1432 6.11933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.28238 5.99043 3.62786 4.28894 6.19132

CAGE analysis