Hb_004241_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig4241: 4966-7285
Sequence    

Annotation

kegg
ID pop:POPTR_0011s13340g
description POPTRDRAFT_569041; hypothetical protein
nr
ID XP_012070699.1
description PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
swissprot
ID Q38834
description Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2
trembl
ID A0A067L4I3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00761 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance rpp13-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004241_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
2 Hb_012379_010 0.167022449 - - -
3 Hb_002157_090 0.1774540632 - - hypothetical protein VITISV_041741 [Vitis vinifera]
4 Hb_000111_230 0.211197095 - - -
5 Hb_002259_140 0.2181438997 - - -
6 Hb_001584_030 0.225089844 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Nelumbo nucifera]
7 Hb_000414_150 0.2358107631 - - mta/sah nucleosidase, putative [Ricinus communis]
8 Hb_001563_020 0.2476529159 transcription factor TF Family: TRAF aberrant large forked product, putative [Ricinus communis]
9 Hb_021906_010 0.2503092028 - - PREDICTED: cysteine proteinase inhibitor-like [Populus euphratica]
10 Hb_001022_040 0.2523007286 - - PREDICTED: uncharacterized protein LOC105634753 [Jatropha curcas]
11 Hb_004200_030 0.2591060199 - - PREDICTED: SWR1 complex subunit 6-like isoform X1 [Citrus sinensis]
12 Hb_007386_010 0.2607899828 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
13 Hb_000025_440 0.2657136046 - - PREDICTED: ankyrin repeat-containing protein P16F5.05c-like [Populus euphratica]
14 Hb_032974_010 0.2669430398 - - -
15 Hb_004097_040 0.2712219544 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
16 Hb_006816_400 0.2813274756 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
17 Hb_002081_170 0.282204917 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
18 Hb_005714_050 0.2876605448 transcription factor TF Family: B3 hypothetical protein POPTR_1461s00200g [Populus trichocarpa]
19 Hb_015586_010 0.2902820625 - - PREDICTED: flavonol sulfotransferase-like [Jatropha curcas]
20 Hb_012008_010 0.2903248579 - - -

Gene co-expression network

sample Hb_004241_010 Hb_004241_010 Hb_012379_010 Hb_012379_010 Hb_004241_010--Hb_012379_010 Hb_002157_090 Hb_002157_090 Hb_004241_010--Hb_002157_090 Hb_000111_230 Hb_000111_230 Hb_004241_010--Hb_000111_230 Hb_002259_140 Hb_002259_140 Hb_004241_010--Hb_002259_140 Hb_001584_030 Hb_001584_030 Hb_004241_010--Hb_001584_030 Hb_000414_150 Hb_000414_150 Hb_004241_010--Hb_000414_150 Hb_090065_010 Hb_090065_010 Hb_012379_010--Hb_090065_010 Hb_012379_010--Hb_002157_090 Hb_001269_290 Hb_001269_290 Hb_012379_010--Hb_001269_290 Hb_015586_010 Hb_015586_010 Hb_012379_010--Hb_015586_010 Hb_012379_010--Hb_000111_230 Hb_002157_090--Hb_001584_030 Hb_001563_020 Hb_001563_020 Hb_002157_090--Hb_001563_020 Hb_002157_090--Hb_015586_010 Hb_012008_010 Hb_012008_010 Hb_002157_090--Hb_012008_010 Hb_069022_010 Hb_069022_010 Hb_000111_230--Hb_069022_010 Hb_005714_050 Hb_005714_050 Hb_000111_230--Hb_005714_050 Hb_032974_010 Hb_032974_010 Hb_000111_230--Hb_032974_010 Hb_000111_230--Hb_000414_150 Hb_000111_230--Hb_002157_090 Hb_021906_010 Hb_021906_010 Hb_002259_140--Hb_021906_010 Hb_004200_030 Hb_004200_030 Hb_002259_140--Hb_004200_030 Hb_007386_010 Hb_007386_010 Hb_002259_140--Hb_007386_010 Hb_004097_040 Hb_004097_040 Hb_002259_140--Hb_004097_040 Hb_001911_070 Hb_001911_070 Hb_002259_140--Hb_001911_070 Hb_000603_010 Hb_000603_010 Hb_001584_030--Hb_000603_010 Hb_001584_030--Hb_001563_020 Hb_133661_010 Hb_133661_010 Hb_001584_030--Hb_133661_010 Hb_001355_120 Hb_001355_120 Hb_001584_030--Hb_001355_120 Hb_002094_040 Hb_002094_040 Hb_000414_150--Hb_002094_040 Hb_006376_010 Hb_006376_010 Hb_000414_150--Hb_006376_010 Hb_000414_150--Hb_001563_020 Hb_000414_150--Hb_005714_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0114991 0.0103365 0.0221277 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0316419 0.0497867 0 0 0

CAGE analysis