Hb_004241_020

Information

Type -
Description -
Location Contig4241: 7955-9503
Sequence    

Annotation

kegg
ID tcc:TCM_031175
description Plastid developmental protein DAG
nr
ID XP_012070698.1
description PREDICTED: DAG protein, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9LPZ1
description Multiple organellar RNA editing factor 9, chloroplastic OS=Arabidopsis thaliana GN=MORF9 PE=1 SV=1
trembl
ID A0A067KVH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00760 PE=4 SV=1
Gene Ontology
ID GO:0009570
description dag chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41939: 7963-9518 , PASA_asmbl_41940: 8057-9124
cDNA
(Sanger)
(ID:Location)		 005_K12.ab1: 8168-9518 , 030_F01.ab1: 8057-9124 , 031_A07.ab1: 7964-8432 , 033_A11.ab1: 8343-9518 , 034_P11.ab1: 7963-8432 , 044_A14.ab1: 7963-8432

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004241_020 0.0 - - PREDICTED: DAG protein, chloroplastic-like [Jatropha curcas]
2 Hb_000297_150 0.0925808669 - - PREDICTED: uncharacterized protein LOC103500908 [Cucumis melo]
3 Hb_000702_080 0.0936307299 - - PREDICTED: uncharacterized protein LOC105630492 [Jatropha curcas]
4 Hb_000173_250 0.1233333355 - - PREDICTED: ribonucleoside-diphosphate reductase small chain A [Jatropha curcas]
5 Hb_000580_150 0.12738764 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Jatropha curcas]
6 Hb_000465_190 0.1302727721 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X2 [Jatropha curcas]
7 Hb_009775_010 0.1309986143 - - PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]
8 Hb_000107_570 0.1311931181 - - PREDICTED: uncharacterized protein LOC105634044 isoform X1 [Jatropha curcas]
9 Hb_002758_010 0.1345193142 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
10 Hb_000462_090 0.1372490642 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
11 Hb_005731_160 0.1394127743 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_000130_320 0.1407803919 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
13 Hb_002660_190 0.1409782928 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
14 Hb_012627_040 0.1436871659 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
15 Hb_000282_080 0.1447459615 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002282_070 0.144840338 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
17 Hb_009778_060 0.1450848838 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
18 Hb_000087_140 0.1457273512 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]
19 Hb_000648_040 0.1457941046 - - unknown [Populus trichocarpa]
20 Hb_093458_060 0.1472749636 - - PREDICTED: uncharacterized protein LOC105633194 [Jatropha curcas]

Gene co-expression network

sample Hb_004241_020 Hb_004241_020 Hb_000297_150 Hb_000297_150 Hb_004241_020--Hb_000297_150 Hb_000702_080 Hb_000702_080 Hb_004241_020--Hb_000702_080 Hb_000173_250 Hb_000173_250 Hb_004241_020--Hb_000173_250 Hb_000580_150 Hb_000580_150 Hb_004241_020--Hb_000580_150 Hb_000465_190 Hb_000465_190 Hb_004241_020--Hb_000465_190 Hb_009775_010 Hb_009775_010 Hb_004241_020--Hb_009775_010 Hb_000340_100 Hb_000340_100 Hb_000297_150--Hb_000340_100 Hb_000297_150--Hb_000465_190 Hb_003747_230 Hb_003747_230 Hb_000297_150--Hb_003747_230 Hb_000297_150--Hb_000702_080 Hb_000297_150--Hb_000173_250 Hb_005237_050 Hb_005237_050 Hb_000702_080--Hb_005237_050 Hb_000107_570 Hb_000107_570 Hb_000702_080--Hb_000107_570 Hb_002217_260 Hb_002217_260 Hb_000702_080--Hb_002217_260 Hb_000130_260 Hb_000130_260 Hb_000702_080--Hb_000130_260 Hb_019053_060 Hb_019053_060 Hb_000173_250--Hb_019053_060 Hb_000173_250--Hb_009775_010 Hb_000462_090 Hb_000462_090 Hb_000173_250--Hb_000462_090 Hb_011689_120 Hb_011689_120 Hb_000173_250--Hb_011689_120 Hb_000487_260 Hb_000487_260 Hb_000173_250--Hb_000487_260 Hb_006846_150 Hb_006846_150 Hb_000173_250--Hb_006846_150 Hb_000311_120 Hb_000311_120 Hb_000580_150--Hb_000311_120 Hb_000580_150--Hb_009775_010 Hb_001438_010 Hb_001438_010 Hb_000580_150--Hb_001438_010 Hb_000221_140 Hb_000221_140 Hb_000580_150--Hb_000221_140 Hb_010174_090 Hb_010174_090 Hb_000580_150--Hb_010174_090 Hb_001935_100 Hb_001935_100 Hb_000580_150--Hb_001935_100 Hb_005253_030 Hb_005253_030 Hb_000465_190--Hb_005253_030 Hb_002758_010 Hb_002758_010 Hb_000465_190--Hb_002758_010 Hb_005116_050 Hb_005116_050 Hb_000465_190--Hb_005116_050 Hb_000120_290 Hb_000120_290 Hb_000465_190--Hb_000120_290 Hb_002205_230 Hb_002205_230 Hb_000465_190--Hb_002205_230 Hb_000465_190--Hb_000340_100 Hb_006538_120 Hb_006538_120 Hb_009775_010--Hb_006538_120 Hb_009775_010--Hb_000221_140 Hb_001410_070 Hb_001410_070 Hb_009775_010--Hb_001410_070 Hb_001660_120 Hb_001660_120 Hb_009775_010--Hb_001660_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2834 23.4214 37.4408 9.78134 16.0351 26.1681
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.4245 46.4168 23.1807 23.7544 105.603

CAGE analysis