Hb_004241_040

Information

Type -
Description -
Location Contig4241: 13418-14361
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41941: 9718-13331
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004241_040 0.0 - - -
2 Hb_032496_030 0.1193849719 - - PREDICTED: WEB family protein At3g02930, chloroplastic [Jatropha curcas]
3 Hb_073367_010 0.1241956197 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
4 Hb_000622_100 0.1278752822 - - PREDICTED: pre-rRNA-processing protein RIX1-like [Jatropha curcas]
5 Hb_025236_040 0.1286331972 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005054_070 0.1395572112 - - unnamed protein product [Vitis vinifera]
7 Hb_004662_010 0.1447824783 - - Nascent polypeptide-associated complex subunit beta [Medicago truncatula]
8 Hb_144898_010 0.1478446427 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
9 Hb_175612_010 0.1481654517 transcription factor TF Family: MBF1 orf [Ricinus communis]
10 Hb_002235_150 0.1483273251 - - -
11 Hb_003633_130 0.1488457421 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
12 Hb_171554_090 0.1550077703 - - PREDICTED: 10 kDa chaperonin [Jatropha curcas]
13 Hb_011828_050 0.1555135019 - - 40S ribosomal protein S23, putative [Ricinus communis]
14 Hb_000107_140 0.1564000853 - - -
15 Hb_011174_010 0.1573610309 - - hypothetical protein JCGZ_10122 [Jatropha curcas]
16 Hb_003849_080 0.1579716736 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_004944_010 0.1581228524 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
18 Hb_012305_040 0.1585141564 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A-like [Jatropha curcas]
19 Hb_012132_040 0.1585218975 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
20 Hb_017259_010 0.1593950613 - - -

Gene co-expression network

sample Hb_004241_040 Hb_004241_040 Hb_032496_030 Hb_032496_030 Hb_004241_040--Hb_032496_030 Hb_073367_010 Hb_073367_010 Hb_004241_040--Hb_073367_010 Hb_000622_100 Hb_000622_100 Hb_004241_040--Hb_000622_100 Hb_025236_040 Hb_025236_040 Hb_004241_040--Hb_025236_040 Hb_005054_070 Hb_005054_070 Hb_004241_040--Hb_005054_070 Hb_004662_010 Hb_004662_010 Hb_004241_040--Hb_004662_010 Hb_012132_040 Hb_012132_040 Hb_032496_030--Hb_012132_040 Hb_041392_010 Hb_041392_010 Hb_032496_030--Hb_041392_010 Hb_001341_050 Hb_001341_050 Hb_032496_030--Hb_001341_050 Hb_032496_030--Hb_005054_070 Hb_005784_080 Hb_005784_080 Hb_032496_030--Hb_005784_080 Hb_073367_010--Hb_000622_100 Hb_000065_080 Hb_000065_080 Hb_073367_010--Hb_000065_080 Hb_004712_180 Hb_004712_180 Hb_073367_010--Hb_004712_180 Hb_011174_010 Hb_011174_010 Hb_073367_010--Hb_011174_010 Hb_003106_130 Hb_003106_130 Hb_073367_010--Hb_003106_130 Hb_002235_150 Hb_002235_150 Hb_073367_010--Hb_002235_150 Hb_007632_250 Hb_007632_250 Hb_000622_100--Hb_007632_250 Hb_000622_100--Hb_011174_010 Hb_000189_530 Hb_000189_530 Hb_000622_100--Hb_000189_530 Hb_000617_320 Hb_000617_320 Hb_000622_100--Hb_000617_320 Hb_119583_010 Hb_119583_010 Hb_000622_100--Hb_119583_010 Hb_001951_260 Hb_001951_260 Hb_025236_040--Hb_001951_260 Hb_017259_010 Hb_017259_010 Hb_025236_040--Hb_017259_010 Hb_000084_290 Hb_000084_290 Hb_025236_040--Hb_000084_290 Hb_000621_060 Hb_000621_060 Hb_025236_040--Hb_000621_060 Hb_003746_040 Hb_003746_040 Hb_025236_040--Hb_003746_040 Hb_000290_020 Hb_000290_020 Hb_025236_040--Hb_000290_020 Hb_000176_120 Hb_000176_120 Hb_005054_070--Hb_000176_120 Hb_136731_010 Hb_136731_010 Hb_005054_070--Hb_136731_010 Hb_000001_040 Hb_000001_040 Hb_005054_070--Hb_000001_040 Hb_144898_010 Hb_144898_010 Hb_005054_070--Hb_144898_010 Hb_181320_010 Hb_181320_010 Hb_004662_010--Hb_181320_010 Hb_004662_010--Hb_144898_010 Hb_012305_040 Hb_012305_040 Hb_004662_010--Hb_012305_040 Hb_175612_010 Hb_175612_010 Hb_004662_010--Hb_175612_010 Hb_005217_020 Hb_005217_020 Hb_004662_010--Hb_005217_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.29417 1.1711 3.15765 3.95674 6.79567 14.5579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.25428 7.33697 0.982304 1.17613 0.269772

CAGE analysis