Hb_004241_100

Information

Type -
Description -
Location Contig4241: 112314-114439
Sequence    

Annotation

kegg
ID pop:POPTR_0011s13320g
description POPTRDRAFT_569039; ethylene-responsive family protein
nr
ID XP_011012087.1
description PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
swissprot
ID Q8GXT3
description Transcription factor bHLH123 OS=Arabidopsis thaliana GN=BHLH123 PE=2 SV=1
trembl
ID B9I057
description Ethylene-responsive family protein OS=Populus trichocarpa GN=POPTR_0011s13320g PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh123-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41946: 112179-112573 , PASA_asmbl_41948: 113532-114160
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004241_100 0.0 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
2 Hb_002110_050 0.0777630982 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002548_020 0.0844380527 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
4 Hb_002218_080 0.0972127073 - - Ankyrin repeat family protein, putative [Theobroma cacao]
5 Hb_155015_020 0.1062585219 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
6 Hb_002811_320 0.1120669783 - - cation-transporting atpase plant, putative [Ricinus communis]
7 Hb_000032_230 0.1145015659 transcription factor TF Family: ERF hypothetical protein JCGZ_20463 [Jatropha curcas]
8 Hb_001198_170 0.1145830036 - - -
9 Hb_000127_200 0.1168040748 - - PREDICTED: uncharacterized protein LOC100255537 [Vitis vinifera]
10 Hb_160576_010 0.1176087066 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
11 Hb_001257_120 0.1218303393 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
12 Hb_008948_110 0.1250760289 - - PREDICTED: peroxidase 25 [Jatropha curcas]
13 Hb_000008_170 0.1258957342 - - PREDICTED: uncharacterized protein LOC105628076 [Jatropha curcas]
14 Hb_006002_020 0.1265968629 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
15 Hb_000780_110 0.1278924482 - - cation-transporting atpase plant, putative [Ricinus communis]
16 Hb_000024_020 0.1300478768 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
17 Hb_113396_010 0.1317180016 - - cytochrome P450, putative [Ricinus communis]
18 Hb_001310_080 0.1333126096 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
19 Hb_001956_160 0.1357607555 - - hypothetical protein L484_009438 [Morus notabilis]
20 Hb_000375_150 0.1375365075 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004241_100 Hb_004241_100 Hb_002110_050 Hb_002110_050 Hb_004241_100--Hb_002110_050 Hb_002548_020 Hb_002548_020 Hb_004241_100--Hb_002548_020 Hb_002218_080 Hb_002218_080 Hb_004241_100--Hb_002218_080 Hb_155015_020 Hb_155015_020 Hb_004241_100--Hb_155015_020 Hb_002811_320 Hb_002811_320 Hb_004241_100--Hb_002811_320 Hb_000032_230 Hb_000032_230 Hb_004241_100--Hb_000032_230 Hb_002110_050--Hb_002548_020 Hb_002110_050--Hb_002218_080 Hb_160576_010 Hb_160576_010 Hb_002110_050--Hb_160576_010 Hb_002110_050--Hb_000032_230 Hb_134022_010 Hb_134022_010 Hb_002110_050--Hb_134022_010 Hb_002548_020--Hb_002218_080 Hb_070613_010 Hb_070613_010 Hb_002548_020--Hb_070613_010 Hb_000127_200 Hb_000127_200 Hb_002548_020--Hb_000127_200 Hb_002548_020--Hb_160576_010 Hb_001310_080 Hb_001310_080 Hb_002218_080--Hb_001310_080 Hb_113396_010 Hb_113396_010 Hb_002218_080--Hb_113396_010 Hb_000024_020 Hb_000024_020 Hb_002218_080--Hb_000024_020 Hb_004112_050 Hb_004112_050 Hb_002218_080--Hb_004112_050 Hb_155015_020--Hb_002811_320 Hb_001198_170 Hb_001198_170 Hb_155015_020--Hb_001198_170 Hb_001257_120 Hb_001257_120 Hb_155015_020--Hb_001257_120 Hb_112145_010 Hb_112145_010 Hb_155015_020--Hb_112145_010 Hb_172240_010 Hb_172240_010 Hb_155015_020--Hb_172240_010 Hb_000201_070 Hb_000201_070 Hb_155015_020--Hb_000201_070 Hb_002811_320--Hb_001198_170 Hb_002811_320--Hb_001257_120 Hb_005946_200 Hb_005946_200 Hb_002811_320--Hb_005946_200 Hb_002811_320--Hb_112145_010 Hb_000032_230--Hb_160576_010 Hb_000780_110 Hb_000780_110 Hb_000032_230--Hb_000780_110 Hb_001956_160 Hb_001956_160 Hb_000032_230--Hb_001956_160 Hb_000032_230--Hb_002548_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0740297 8.3149 3.26854 4.83471 0 0.0617475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.4598

CAGE analysis