Hb_004241_140

Information

Type -
Description -
Location Contig4241: 153465-162882
Sequence    

Annotation

kegg
ID tcc:TCM_046864
description S-locus lectin protein kinase family protein, putative
nr
ID XP_007021191.1
description S-locus lectin protein kinase family protein, putative [Theobroma cacao]
swissprot
ID P0DH62
description Inactive protein kinase SELMODRAFT_444075 OS=Selaginella moellendorffii GN=SELMODRAFT_444075 PE=2 SV=1
trembl
ID A0A061F6R3
description S-locus lectin protein kinase family protein, putative OS=Theobroma cacao GN=TCM_046864 PE=4 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase at4g27290

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41951: 162723-164097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004241_140 0.0 - - S-locus lectin protein kinase family protein, putative [Theobroma cacao]
2 Hb_000045_290 0.0247995343 - - -
3 Hb_005649_070 0.0285907808 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001398_110 0.0514075735 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
5 Hb_001117_020 0.0702950778 - - hypothetical protein CICLE_v10008579mg [Citrus clementina]
6 Hb_055877_010 0.0892402047 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
7 Hb_019429_020 0.0893559867 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_000331_020 0.0899595466 - - cytochrome P450, putative [Ricinus communis]
9 Hb_008821_030 0.0919874878 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
10 Hb_152528_010 0.0966664945 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
11 Hb_000756_030 0.0998788987 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
12 Hb_012146_010 0.1050895991 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
13 Hb_108744_010 0.1066834781 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
14 Hb_000371_030 0.1078061763 - - PREDICTED: LOW QUALITY PROTEIN: anthocyanidin 3-O-glucosyltransferase 5 [Prunus mume]
15 Hb_071654_010 0.1084345759 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
16 Hb_004788_030 0.1087319457 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
17 Hb_007747_070 0.108734799 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
18 Hb_000164_030 0.1105309848 - - PREDICTED: RING-H2 finger protein ATL14-like [Zea mays]
19 Hb_048141_060 0.117997721 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
20 Hb_004586_050 0.1181741538 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]

Gene co-expression network

sample Hb_004241_140 Hb_004241_140 Hb_000045_290 Hb_000045_290 Hb_004241_140--Hb_000045_290 Hb_005649_070 Hb_005649_070 Hb_004241_140--Hb_005649_070 Hb_001398_110 Hb_001398_110 Hb_004241_140--Hb_001398_110 Hb_001117_020 Hb_001117_020 Hb_004241_140--Hb_001117_020 Hb_055877_010 Hb_055877_010 Hb_004241_140--Hb_055877_010 Hb_019429_020 Hb_019429_020 Hb_004241_140--Hb_019429_020 Hb_000045_290--Hb_001398_110 Hb_000045_290--Hb_001117_020 Hb_000045_290--Hb_005649_070 Hb_000045_290--Hb_019429_020 Hb_008821_030 Hb_008821_030 Hb_000045_290--Hb_008821_030 Hb_005649_070--Hb_001398_110 Hb_000164_030 Hb_000164_030 Hb_005649_070--Hb_000164_030 Hb_005649_070--Hb_055877_010 Hb_048141_060 Hb_048141_060 Hb_005649_070--Hb_048141_060 Hb_001398_110--Hb_001117_020 Hb_001398_110--Hb_019429_020 Hb_000331_020 Hb_000331_020 Hb_001398_110--Hb_000331_020 Hb_001117_020--Hb_019429_020 Hb_001117_020--Hb_008821_030 Hb_004788_030 Hb_004788_030 Hb_001117_020--Hb_004788_030 Hb_012146_010 Hb_012146_010 Hb_055877_010--Hb_012146_010 Hb_007894_040 Hb_007894_040 Hb_055877_010--Hb_007894_040 Hb_007747_070 Hb_007747_070 Hb_055877_010--Hb_007747_070 Hb_071654_010 Hb_071654_010 Hb_055877_010--Hb_071654_010 Hb_055877_010--Hb_008821_030 Hb_009385_010 Hb_009385_010 Hb_055877_010--Hb_009385_010 Hb_019429_020--Hb_008821_030 Hb_019429_020--Hb_004788_030 Hb_006083_010 Hb_006083_010 Hb_019429_020--Hb_006083_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0331911 0.182349 0.0631665 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis