Hb_004241_160

Information

Type -
Description -
Location Contig4241: 162909-169115
Sequence    

Annotation

kegg
ID vvi:100258925
description G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
nr
ID XP_012071197.1
description PREDICTED: receptor-like serine/threonine-protein kinase SD1-7 [Jatropha curcas]
swissprot
ID O81832
description G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=3 SV=4
trembl
ID A0A067KS82
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_00749 PE=3 SV=1
Gene Ontology
ID GO:0004674
description s-locus lectin protein kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41951: 162723-164097 , PASA_asmbl_41952: 164178-166229 , PASA_asmbl_41953: 166501-166808
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004241_160 0.0 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-7 [Jatropha curcas]
2 Hb_000160_110 0.0724076943 - - PREDICTED: uncharacterized protein LOC100253584 [Vitis vinifera]
3 Hb_008226_050 0.0829476179 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
4 Hb_006573_310 0.0844760834 - - Tellurite resistance protein tehA, putative [Ricinus communis]
5 Hb_005914_100 0.0908298726 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000527_030 0.0925989514 - - PREDICTED: uncharacterized protein At5g65660 [Jatropha curcas]
7 Hb_003641_040 0.0927950493 - - hypothetical protein POPTR_0006s14010g [Populus trichocarpa]
8 Hb_004097_030 0.1007150461 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
9 Hb_002453_040 0.1051049992 - - PREDICTED: uncharacterized protein LOC105636487 [Jatropha curcas]
10 Hb_056196_020 0.105936099 - - PREDICTED: uncharacterized protein LOC105631532 isoform X1 [Jatropha curcas]
11 Hb_007245_030 0.1068929105 - - conserved hypothetical protein [Ricinus communis]
12 Hb_113974_010 0.1075518118 - - DNA binding protein, putative [Ricinus communis]
13 Hb_000675_130 0.112430358 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like isoform X2 [Jatropha curcas]
14 Hb_004174_030 0.112743372 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]
15 Hb_001301_310 0.1129483589 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004225_160 0.1154171222 - - PREDICTED: kiwellin-like [Jatropha curcas]
17 Hb_002837_120 0.1155379638 - - PREDICTED: legumin A-like [Jatropha curcas]
18 Hb_000394_120 0.1155666018 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Populus euphratica]
19 Hb_004422_030 0.1166023049 - - PREDICTED: serine/threonine-protein kinase SAPK7-like [Jatropha curcas]
20 Hb_004774_080 0.1174868583 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004241_160 Hb_004241_160 Hb_000160_110 Hb_000160_110 Hb_004241_160--Hb_000160_110 Hb_008226_050 Hb_008226_050 Hb_004241_160--Hb_008226_050 Hb_006573_310 Hb_006573_310 Hb_004241_160--Hb_006573_310 Hb_005914_100 Hb_005914_100 Hb_004241_160--Hb_005914_100 Hb_000527_030 Hb_000527_030 Hb_004241_160--Hb_000527_030 Hb_003641_040 Hb_003641_040 Hb_004241_160--Hb_003641_040 Hb_000160_110--Hb_003641_040 Hb_113974_010 Hb_113974_010 Hb_000160_110--Hb_113974_010 Hb_000160_110--Hb_000527_030 Hb_002837_120 Hb_002837_120 Hb_000160_110--Hb_002837_120 Hb_000160_110--Hb_006573_310 Hb_000675_130 Hb_000675_130 Hb_008226_050--Hb_000675_130 Hb_008226_050--Hb_003641_040 Hb_002205_220 Hb_002205_220 Hb_008226_050--Hb_002205_220 Hb_001257_070 Hb_001257_070 Hb_008226_050--Hb_001257_070 Hb_000130_400 Hb_000130_400 Hb_008226_050--Hb_000130_400 Hb_004774_080 Hb_004774_080 Hb_006573_310--Hb_004774_080 Hb_007245_030 Hb_007245_030 Hb_006573_310--Hb_007245_030 Hb_006573_310--Hb_005914_100 Hb_078448_010 Hb_078448_010 Hb_006573_310--Hb_078448_010 Hb_000527_020 Hb_000527_020 Hb_006573_310--Hb_000527_020 Hb_004097_030 Hb_004097_030 Hb_005914_100--Hb_004097_030 Hb_002928_150 Hb_002928_150 Hb_005914_100--Hb_002928_150 Hb_004174_030 Hb_004174_030 Hb_005914_100--Hb_004174_030 Hb_005914_100--Hb_007245_030 Hb_003398_050 Hb_003398_050 Hb_005914_100--Hb_003398_050 Hb_056196_020 Hb_056196_020 Hb_005914_100--Hb_056196_020 Hb_004007_080 Hb_004007_080 Hb_000527_030--Hb_004007_080 Hb_002453_040 Hb_002453_040 Hb_000527_030--Hb_002453_040 Hb_052530_010 Hb_052530_010 Hb_000527_030--Hb_052530_010 Hb_074660_010 Hb_074660_010 Hb_000527_030--Hb_074660_010 Hb_000083_280 Hb_000083_280 Hb_000527_030--Hb_000083_280 Hb_003641_040--Hb_000675_130 Hb_001969_030 Hb_001969_030 Hb_003641_040--Hb_001969_030 Hb_000853_020 Hb_000853_020 Hb_003641_040--Hb_000853_020 Hb_000394_120 Hb_000394_120 Hb_003641_040--Hb_000394_120 Hb_001123_180 Hb_001123_180 Hb_003641_040--Hb_001123_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.262602 9.9049 3.86242 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0161405 0 0.0242531 0.050407 0.513883

CAGE analysis