Hb_004241_170

Information

Type -
Description -
Location Contig4241: 173989-177352
Sequence    

Annotation

kegg
ID pop:POPTR_0001s44380g
description hypothetical protein
nr
ID XP_012071189.1
description PREDICTED: uncharacterized protein LOC105633220 [Jatropha curcas]
swissprot
ID O81905
description Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana GN=SD18 PE=1 SV=1
trembl
ID U5GWH1
description Serine/threonine-protein kinase OS=Populus trichocarpa GN=POPTR_0001s44380g PE=3 SV=1
Gene Ontology
ID GO:0004674
description s-locus lectin protein kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004241_170 0.0 - - PREDICTED: uncharacterized protein LOC105633220 [Jatropha curcas]
2 Hb_008341_010 0.0628364549 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
3 Hb_001631_110 0.0895894869 - - PREDICTED: LOW QUALITY PROTEIN: gamma-glutamyltranspeptidase 1-like [Populus euphratica]
4 Hb_010091_030 0.0992384794 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
5 Hb_004800_140 0.103119955 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
6 Hb_000732_160 0.1064835243 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
7 Hb_010175_050 0.121228833 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
8 Hb_010614_010 0.1339478013 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
9 Hb_008202_010 0.1389904396 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
10 Hb_029584_110 0.1414861498 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]
11 Hb_000656_260 0.1424101956 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
12 Hb_019026_040 0.1508713478 - - S-locus lectin protein kinase family protein [Theobroma cacao]
13 Hb_036492_020 0.1525037208 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
14 Hb_003811_030 0.1567594817 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
15 Hb_010904_010 0.1609358697 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
16 Hb_000402_180 0.1632402098 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
17 Hb_183025_010 0.1647677891 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
18 Hb_002999_130 0.1660633489 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
19 Hb_026016_010 0.1697167498 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
20 Hb_003970_010 0.1698588091 - - PREDICTED: sigma factor binding protein 1, chloroplastic-like [Populus euphratica]

Gene co-expression network

sample Hb_004241_170 Hb_004241_170 Hb_008341_010 Hb_008341_010 Hb_004241_170--Hb_008341_010 Hb_001631_110 Hb_001631_110 Hb_004241_170--Hb_001631_110 Hb_010091_030 Hb_010091_030 Hb_004241_170--Hb_010091_030 Hb_004800_140 Hb_004800_140 Hb_004241_170--Hb_004800_140 Hb_000732_160 Hb_000732_160 Hb_004241_170--Hb_000732_160 Hb_010175_050 Hb_010175_050 Hb_004241_170--Hb_010175_050 Hb_008341_010--Hb_001631_110 Hb_008341_010--Hb_010091_030 Hb_008341_010--Hb_010175_050 Hb_008341_010--Hb_004800_140 Hb_008341_010--Hb_000732_160 Hb_001631_110--Hb_000732_160 Hb_001631_110--Hb_010091_030 Hb_001631_110--Hb_004800_140 Hb_017098_020 Hb_017098_020 Hb_001631_110--Hb_017098_020 Hb_003811_030 Hb_003811_030 Hb_010091_030--Hb_003811_030 Hb_010091_030--Hb_010175_050 Hb_164146_020 Hb_164146_020 Hb_010091_030--Hb_164146_020 Hb_002999_130 Hb_002999_130 Hb_004800_140--Hb_002999_130 Hb_000340_380 Hb_000340_380 Hb_004800_140--Hb_000340_380 Hb_004800_140--Hb_000732_160 Hb_010614_010 Hb_010614_010 Hb_000732_160--Hb_010614_010 Hb_031685_010 Hb_031685_010 Hb_000732_160--Hb_031685_010 Hb_094439_010 Hb_094439_010 Hb_000732_160--Hb_094439_010 Hb_010904_010 Hb_010904_010 Hb_000732_160--Hb_010904_010 Hb_005772_020 Hb_005772_020 Hb_010175_050--Hb_005772_020 Hb_019026_040 Hb_019026_040 Hb_010175_050--Hb_019026_040 Hb_010175_050--Hb_003811_030 Hb_000230_250 Hb_000230_250 Hb_010175_050--Hb_000230_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.83707 1.62573 0.221672 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0169261 0 0 0.132189 1.04844

CAGE analysis