Hb_004241_200

Information

Type -
Description -
Location Contig4241: 197226-197594
Sequence    

Annotation

kegg
ID pop:POPTR_0001s42270g
description hypothetical protein
nr
ID KDP38987.1
description hypothetical protein JCGZ_00744 [Jatropha curcas]
swissprot
ID Q9LSQ6
description Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1
trembl
ID A0A067KS76
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00744 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding protein pbp1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 008_G11.ab1: 197162-197669 , 027_H20.ab1: 197098-197670 , 031_G05.ab1: 197098-197674 , 031_H24.ab1: 197098-197674

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004241_200 0.0 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
2 Hb_008406_030 0.073822092 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
3 Hb_003209_040 0.1124764084 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Gossypium raimondii]
4 Hb_001195_650 0.1220152212 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
5 Hb_000638_180 0.1268741418 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
6 Hb_003209_090 0.1370965887 - - Xyloglucan endotransglucosylase/hydrolase family protein [Theobroma cacao]
7 Hb_000983_110 0.1415354915 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
8 Hb_009557_050 0.1415495702 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
9 Hb_027905_010 0.142511914 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
10 Hb_019026_030 0.1473339193 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
11 Hb_002026_050 0.159711598 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
12 Hb_003209_120 0.1628022819 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
13 Hb_097634_010 0.1635572544 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
14 Hb_182970_010 0.1640894377 - - calmodulin-binding protein 60-D [Populus trichocarpa]
15 Hb_004297_080 0.1641278933 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
16 Hb_002400_040 0.1656959208 - - PREDICTED: uncharacterized protein LOC105637633 [Jatropha curcas]
17 Hb_001472_140 0.1704222291 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
18 Hb_004109_110 0.172398426 - - dioxygenase family protein [Populus trichocarpa]
19 Hb_000365_280 0.1729858128 - - calcium binding protein/cast, putative [Ricinus communis]
20 Hb_000714_070 0.1765811393 transcription factor TF Family: LOB hypothetical protein JCGZ_14754 [Jatropha curcas]

Gene co-expression network

sample Hb_004241_200 Hb_004241_200 Hb_008406_030 Hb_008406_030 Hb_004241_200--Hb_008406_030 Hb_003209_040 Hb_003209_040 Hb_004241_200--Hb_003209_040 Hb_001195_650 Hb_001195_650 Hb_004241_200--Hb_001195_650 Hb_000638_180 Hb_000638_180 Hb_004241_200--Hb_000638_180 Hb_003209_090 Hb_003209_090 Hb_004241_200--Hb_003209_090 Hb_000983_110 Hb_000983_110 Hb_004241_200--Hb_000983_110 Hb_009557_050 Hb_009557_050 Hb_008406_030--Hb_009557_050 Hb_001472_140 Hb_001472_140 Hb_008406_030--Hb_001472_140 Hb_008406_030--Hb_001195_650 Hb_004297_080 Hb_004297_080 Hb_008406_030--Hb_004297_080 Hb_027905_010 Hb_027905_010 Hb_008406_030--Hb_027905_010 Hb_003209_040--Hb_027905_010 Hb_003209_040--Hb_001195_650 Hb_019026_030 Hb_019026_030 Hb_003209_040--Hb_019026_030 Hb_003209_120 Hb_003209_120 Hb_003209_040--Hb_003209_120 Hb_003209_040--Hb_008406_030 Hb_001195_650--Hb_027905_010 Hb_004586_230 Hb_004586_230 Hb_001195_650--Hb_004586_230 Hb_001195_650--Hb_000983_110 Hb_000777_020 Hb_000777_020 Hb_001195_650--Hb_000777_020 Hb_000732_100 Hb_000732_100 Hb_000638_180--Hb_000732_100 Hb_114733_010 Hb_114733_010 Hb_000638_180--Hb_114733_010 Hb_007292_050 Hb_007292_050 Hb_000638_180--Hb_007292_050 Hb_097634_010 Hb_097634_010 Hb_000638_180--Hb_097634_010 Hb_000742_260 Hb_000742_260 Hb_000638_180--Hb_000742_260 Hb_000371_120 Hb_000371_120 Hb_003209_090--Hb_000371_120 Hb_182970_010 Hb_182970_010 Hb_003209_090--Hb_182970_010 Hb_003209_090--Hb_097634_010 Hb_002400_040 Hb_002400_040 Hb_003209_090--Hb_002400_040 Hb_000077_160 Hb_000077_160 Hb_003209_090--Hb_000077_160 Hb_000604_050 Hb_000604_050 Hb_000983_110--Hb_000604_050 Hb_003906_150 Hb_003906_150 Hb_000983_110--Hb_003906_150 Hb_010267_030 Hb_010267_030 Hb_000983_110--Hb_010267_030 Hb_000714_070 Hb_000714_070 Hb_000983_110--Hb_000714_070 Hb_000120_600 Hb_000120_600 Hb_000983_110--Hb_000120_600
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.9923 421.88 156.097 601.936 1.48203 2.13298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8405 42.6325 24.0433 24.6228 93.1307

CAGE analysis