Hb_004242_060

Information

Type -
Description -
Location Contig4242: 73630-74244
Sequence    

Annotation

kegg
ID pop:POPTR_0022s00270g
description hypothetical protein
nr
ID XP_012070702.1
description PREDICTED: nicotinamidase 2-like [Jatropha curcas]
swissprot
ID Q9FMX7
description Nicotinamidase 2 OS=Arabidopsis thaliana GN=NIC2 PE=1 SV=1
trembl
ID A0A067KS96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00764 PE=4 SV=1
Gene Ontology
ID GO:0008908
description nicotinamidase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41957: 73345-73714
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004242_060 0.0 - - PREDICTED: nicotinamidase 2-like [Jatropha curcas]
2 Hb_021254_030 0.0948262261 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
3 Hb_015941_030 0.095157669 - - unknown [Populus trichocarpa]
4 Hb_000808_040 0.0966173476 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
5 Hb_000613_090 0.099394771 - - PREDICTED: uncharacterized protein LOC105641542 isoform X1 [Jatropha curcas]
6 Hb_001014_010 0.100589912 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
7 Hb_150360_030 0.1016238146 - - PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]
8 Hb_022250_030 0.104871366 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004812_010 0.1071849972 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Jatropha curcas]
10 Hb_000699_130 0.1072320853 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000645_050 0.1074256935 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
12 Hb_000116_110 0.1077364412 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
13 Hb_007919_060 0.1079094763 - - PREDICTED: UPF0047 protein C4A8.02c [Jatropha curcas]
14 Hb_003994_180 0.108060119 - - PREDICTED: probable mitochondrial adenine nucleotide transporter BTL1 [Jatropha curcas]
15 Hb_010710_110 0.1093310727 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
16 Hb_003406_010 0.1096193994 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
17 Hb_070739_010 0.1099586486 - - PREDICTED: probable aminotransferase ACS12 isoform X2 [Jatropha curcas]
18 Hb_015978_060 0.1101862706 - - unnamed protein product [Vitis vinifera]
19 Hb_086639_070 0.1108513293 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
20 Hb_009615_150 0.1112578513 - - PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]

Gene co-expression network

sample Hb_004242_060 Hb_004242_060 Hb_021254_030 Hb_021254_030 Hb_004242_060--Hb_021254_030 Hb_015941_030 Hb_015941_030 Hb_004242_060--Hb_015941_030 Hb_000808_040 Hb_000808_040 Hb_004242_060--Hb_000808_040 Hb_000613_090 Hb_000613_090 Hb_004242_060--Hb_000613_090 Hb_001014_010 Hb_001014_010 Hb_004242_060--Hb_001014_010 Hb_150360_030 Hb_150360_030 Hb_004242_060--Hb_150360_030 Hb_004109_200 Hb_004109_200 Hb_021254_030--Hb_004109_200 Hb_001195_690 Hb_001195_690 Hb_021254_030--Hb_001195_690 Hb_010381_070 Hb_010381_070 Hb_021254_030--Hb_010381_070 Hb_000139_410 Hb_000139_410 Hb_021254_030--Hb_000139_410 Hb_009615_150 Hb_009615_150 Hb_021254_030--Hb_009615_150 Hb_003994_180 Hb_003994_180 Hb_021254_030--Hb_003994_180 Hb_029584_080 Hb_029584_080 Hb_015941_030--Hb_029584_080 Hb_015941_030--Hb_000808_040 Hb_002232_170 Hb_002232_170 Hb_015941_030--Hb_002232_170 Hb_000116_110 Hb_000116_110 Hb_015941_030--Hb_000116_110 Hb_008406_160 Hb_008406_160 Hb_015941_030--Hb_008406_160 Hb_002475_160 Hb_002475_160 Hb_015941_030--Hb_002475_160 Hb_070739_010 Hb_070739_010 Hb_000808_040--Hb_070739_010 Hb_086639_070 Hb_086639_070 Hb_000808_040--Hb_086639_070 Hb_000808_040--Hb_008406_160 Hb_000465_430 Hb_000465_430 Hb_000808_040--Hb_000465_430 Hb_000808_040--Hb_003994_180 Hb_000853_420 Hb_000853_420 Hb_000613_090--Hb_000853_420 Hb_000038_170 Hb_000038_170 Hb_000613_090--Hb_000038_170 Hb_011671_430 Hb_011671_430 Hb_000613_090--Hb_011671_430 Hb_022250_030 Hb_022250_030 Hb_000613_090--Hb_022250_030 Hb_000034_100 Hb_000034_100 Hb_000613_090--Hb_000034_100 Hb_000487_110 Hb_000487_110 Hb_000613_090--Hb_000487_110 Hb_012305_070 Hb_012305_070 Hb_001014_010--Hb_012305_070 Hb_000803_300 Hb_000803_300 Hb_001014_010--Hb_000803_300 Hb_031939_010 Hb_031939_010 Hb_001014_010--Hb_031939_010 Hb_000699_130 Hb_000699_130 Hb_001014_010--Hb_000699_130 Hb_008887_050 Hb_008887_050 Hb_001014_010--Hb_008887_050 Hb_000085_060 Hb_000085_060 Hb_001014_010--Hb_000085_060 Hb_004310_130 Hb_004310_130 Hb_150360_030--Hb_004310_130 Hb_007218_080 Hb_007218_080 Hb_150360_030--Hb_007218_080 Hb_000053_130 Hb_000053_130 Hb_150360_030--Hb_000053_130 Hb_001635_170 Hb_001635_170 Hb_150360_030--Hb_001635_170 Hb_001369_180 Hb_001369_180 Hb_150360_030--Hb_001369_180 Hb_000076_120 Hb_000076_120 Hb_150360_030--Hb_000076_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.8757 37.013 20.7141 18.2315 58.5246 55.5357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.1045 37.6457 34.3816 10.6848 12.4867

CAGE analysis