Hb_004242_070

Information

Type -
Description -
Location Contig4242: 76444-77119
Sequence    

Annotation

kegg
ID brp:103868641
description putative ribonuclease H protein At1g65750
nr
ID AAD22368.1
description putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID Q9SJZ8
description Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004242_070 0.0 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
2 Hb_083493_020 0.1380933648 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]
3 Hb_002400_370 0.1851621074 - - PREDICTED: uncharacterized protein LOC105637607 [Jatropha curcas]
4 Hb_002498_210 0.2696479333 - - SKU5 similar 4 isoform 3 [Theobroma cacao]
5 Hb_116360_010 0.276461819 - - -
6 Hb_157263_010 0.2784206571 - - PREDICTED: monomethylxanthine methyltransferase 2-like isoform X4 [Jatropha curcas]
7 Hb_001103_040 0.2893874803 - - hypothetical protein POPTR_0013s11170g [Populus trichocarpa]
8 Hb_003442_010 0.2919320076 - - PREDICTED: structural maintenance of chromosomes protein 4-like isoform X2 [Citrus sinensis]
9 Hb_009913_010 0.2952214058 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
10 Hb_027506_050 0.3060681115 - - -
11 Hb_000189_490 0.3178389615 - - Sulfate/thiosulfate import ATP-binding protein cysA [Theobroma cacao]
12 Hb_000624_020 0.3199047408 transcription factor TF Family: NAC NAC transcription factor 004 [Jatropha curcas]
13 Hb_010423_010 0.3308616179 - - -
14 Hb_121304_020 0.3361436427 - - -
15 Hb_000116_600 0.3365340565 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
16 Hb_005542_100 0.3413356809 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0013s03910g [Populus trichocarpa]
17 Hb_022593_030 0.3444466711 - - polyprotein [Citrus endogenous pararetrovirus]
18 Hb_005147_050 0.3506044623 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
19 Hb_184705_010 0.3510309337 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
20 Hb_017469_090 0.3609488467 - - Integrase, catalytic region, Zinc finger, CCHC-type, Peptidase aspartic, catalytic, putative [Theobroma cacao]

Gene co-expression network

sample Hb_004242_070 Hb_004242_070 Hb_083493_020 Hb_083493_020 Hb_004242_070--Hb_083493_020 Hb_002400_370 Hb_002400_370 Hb_004242_070--Hb_002400_370 Hb_002498_210 Hb_002498_210 Hb_004242_070--Hb_002498_210 Hb_116360_010 Hb_116360_010 Hb_004242_070--Hb_116360_010 Hb_157263_010 Hb_157263_010 Hb_004242_070--Hb_157263_010 Hb_001103_040 Hb_001103_040 Hb_004242_070--Hb_001103_040 Hb_083493_020--Hb_001103_040 Hb_003442_010 Hb_003442_010 Hb_083493_020--Hb_003442_010 Hb_000189_490 Hb_000189_490 Hb_083493_020--Hb_000189_490 Hb_083493_020--Hb_002400_370 Hb_083493_020--Hb_157263_010 Hb_002400_370--Hb_002498_210 Hb_000184_140 Hb_000184_140 Hb_002400_370--Hb_000184_140 Hb_002400_370--Hb_116360_010 Hb_000624_020 Hb_000624_020 Hb_002400_370--Hb_000624_020 Hb_000646_020 Hb_000646_020 Hb_002498_210--Hb_000646_020 Hb_002498_210--Hb_000184_140 Hb_076233_010 Hb_076233_010 Hb_002498_210--Hb_076233_010 Hb_002498_210--Hb_083493_020 Hb_002498_210--Hb_116360_010 Hb_052802_010 Hb_052802_010 Hb_116360_010--Hb_052802_010 Hb_000174_020 Hb_000174_020 Hb_116360_010--Hb_000174_020 Hb_007545_200 Hb_007545_200 Hb_116360_010--Hb_007545_200 Hb_008536_030 Hb_008536_030 Hb_116360_010--Hb_008536_030 Hb_010175_060 Hb_010175_060 Hb_157263_010--Hb_010175_060 Hb_050241_010 Hb_050241_010 Hb_157263_010--Hb_050241_010 Hb_006588_030 Hb_006588_030 Hb_157263_010--Hb_006588_030 Hb_157263_010--Hb_000189_490 Hb_001493_170 Hb_001493_170 Hb_157263_010--Hb_001493_170 Hb_004122_030 Hb_004122_030 Hb_157263_010--Hb_004122_030 Hb_001103_040--Hb_000189_490 Hb_011382_050 Hb_011382_050 Hb_001103_040--Hb_011382_050 Hb_001103_040--Hb_003442_010 Hb_027506_050 Hb_027506_050 Hb_001103_040--Hb_027506_050 Hb_009913_010 Hb_009913_010 Hb_001103_040--Hb_009913_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.21796 0.118844 0 0.222011 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.180927 0

CAGE analysis