Hb_004242_080

Information

Type -
Description -
Location Contig4242: 77713-81406
Sequence    

Annotation

kegg
ID pop:POPTR_0011s13360g
description POPTRDRAFT_661061; hypothetical protein
nr
ID XP_012070703.1
description PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L4I9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00766 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41959: 77775-81395 , PASA_asmbl_41960: 78896-81395 , PASA_asmbl_41961: 80374-81386
cDNA
(Sanger)
(ID:Location)		 040_F13.ab1: 77775-80027

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004242_080 0.0 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
2 Hb_000522_080 0.0762214841 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
3 Hb_000163_200 0.0831027192 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
4 Hb_034350_010 0.1020822199 - - PREDICTED: TMV resistance protein N-like isoform X2 [Populus euphratica]
5 Hb_001221_410 0.1030548276 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
6 Hb_000987_120 0.1058411807 - - PREDICTED: protein SIEL [Jatropha curcas]
7 Hb_070986_010 0.1067902816 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
8 Hb_004657_020 0.1070816789 - - rer1 protein, putative [Ricinus communis]
9 Hb_001824_070 0.1085888639 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
10 Hb_010883_150 0.1090067986 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
11 Hb_001257_080 0.1099001068 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001538_100 0.1107278632 - - PREDICTED: histone deacetylase 6 [Jatropha curcas]
13 Hb_011689_040 0.1127375826 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
14 Hb_001442_020 0.1129351886 - - unknown [Populus trichocarpa]
15 Hb_001584_070 0.1133589592 - - conserved hypothetical protein [Ricinus communis]
16 Hb_014720_080 0.113848637 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
17 Hb_003020_230 0.1144863869 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
18 Hb_001722_100 0.1147184928 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010172_070 0.1155893097 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
20 Hb_011828_020 0.1168697372 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004242_080 Hb_004242_080 Hb_000522_080 Hb_000522_080 Hb_004242_080--Hb_000522_080 Hb_000163_200 Hb_000163_200 Hb_004242_080--Hb_000163_200 Hb_034350_010 Hb_034350_010 Hb_004242_080--Hb_034350_010 Hb_001221_410 Hb_001221_410 Hb_004242_080--Hb_001221_410 Hb_000987_120 Hb_000987_120 Hb_004242_080--Hb_000987_120 Hb_070986_010 Hb_070986_010 Hb_004242_080--Hb_070986_010 Hb_001722_100 Hb_001722_100 Hb_000522_080--Hb_001722_100 Hb_021650_030 Hb_021650_030 Hb_000522_080--Hb_021650_030 Hb_014720_080 Hb_014720_080 Hb_000522_080--Hb_014720_080 Hb_000091_090 Hb_000091_090 Hb_000522_080--Hb_000091_090 Hb_004223_280 Hb_004223_280 Hb_000522_080--Hb_004223_280 Hb_004607_140 Hb_004607_140 Hb_000163_200--Hb_004607_140 Hb_001951_110 Hb_001951_110 Hb_000163_200--Hb_001951_110 Hb_157854_010 Hb_157854_010 Hb_000163_200--Hb_157854_010 Hb_000417_110 Hb_000417_110 Hb_000163_200--Hb_000417_110 Hb_000479_180 Hb_000479_180 Hb_000163_200--Hb_000479_180 Hb_004657_020 Hb_004657_020 Hb_034350_010--Hb_004657_020 Hb_034350_010--Hb_014720_080 Hb_000300_640 Hb_000300_640 Hb_034350_010--Hb_000300_640 Hb_002685_020 Hb_002685_020 Hb_034350_010--Hb_002685_020 Hb_011310_190 Hb_011310_190 Hb_034350_010--Hb_011310_190 Hb_007254_040 Hb_007254_040 Hb_001221_410--Hb_007254_040 Hb_032717_080 Hb_032717_080 Hb_001221_410--Hb_032717_080 Hb_002105_090 Hb_002105_090 Hb_001221_410--Hb_002105_090 Hb_000169_010 Hb_000169_010 Hb_001221_410--Hb_000169_010 Hb_001135_050 Hb_001135_050 Hb_001221_410--Hb_001135_050 Hb_001246_090 Hb_001246_090 Hb_001221_410--Hb_001246_090 Hb_174865_030 Hb_174865_030 Hb_000987_120--Hb_174865_030 Hb_000307_090 Hb_000307_090 Hb_000987_120--Hb_000307_090 Hb_000987_120--Hb_001722_100 Hb_000987_120--Hb_000522_080 Hb_005736_060 Hb_005736_060 Hb_000987_120--Hb_005736_060 Hb_003185_080 Hb_003185_080 Hb_000987_120--Hb_003185_080 Hb_004204_120 Hb_004204_120 Hb_070986_010--Hb_004204_120 Hb_001584_070 Hb_001584_070 Hb_070986_010--Hb_001584_070 Hb_070986_010--Hb_002105_090 Hb_000798_030 Hb_000798_030 Hb_070986_010--Hb_000798_030 Hb_010883_150 Hb_010883_150 Hb_070986_010--Hb_010883_150 Hb_001257_080 Hb_001257_080 Hb_070986_010--Hb_001257_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.932 18.514 5.66205 18.8272 46.8445 35.575
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
87.6664 74.6951 34.7148 31.8024 4.80365

CAGE analysis