Hb_004242_100

Information

Type -
Description -
Location Contig4242: 88039-96653
Sequence    

Annotation

kegg
ID rcu:RCOM_0986930
description RNA binding protein, putative
nr
ID XP_002530915.1
description RNA binding protein, putative [Ricinus communis]
swissprot
ID Q9FNR1
description Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG3 PE=2 SV=1
trembl
ID B9SY46
description RNA binding protein, putative OS=Ricinus communis GN=RCOM_0986930 PE=4 SV=1
Gene Ontology
ID GO:0005739
description glycine-rich rna-binding protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41963: 96200-97012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004242_100 0.0 - - RNA binding protein, putative [Ricinus communis]
2 Hb_004072_010 0.0632855256 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
3 Hb_005941_010 0.0897156796 - - PREDICTED: protein SAND [Jatropha curcas]
4 Hb_005245_090 0.0903526959 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
5 Hb_003050_040 0.0961843906 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
6 Hb_002263_010 0.1008576579 - - hypothetical protein CICLE_v10012259mg [Citrus clementina]
7 Hb_000705_260 0.1013832503 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006816_360 0.1014291824 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
9 Hb_000700_090 0.108272786 - - protein with unknown function [Ricinus communis]
10 Hb_010261_020 0.1087284955 - - hypothetical protein JCGZ_17258 [Jatropha curcas]
11 Hb_000984_190 0.1088613882 - - -
12 Hb_000152_140 0.1103974572 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
13 Hb_098709_010 0.1112460072 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
14 Hb_003398_060 0.1119425363 - - PREDICTED: rRNA methyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_003086_020 0.1143966802 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
16 Hb_013405_130 0.1201174744 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
17 Hb_003453_010 0.1204926008 - - conserved hypothetical protein [Ricinus communis]
18 Hb_035524_030 0.1205353641 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004116_040 0.1226698918 transcription factor TF Family: HMG hypothetical protein POPTR_0010s19720g [Populus trichocarpa]
20 Hb_000186_010 0.123360519 - - PREDICTED: EH domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004242_100 Hb_004242_100 Hb_004072_010 Hb_004072_010 Hb_004242_100--Hb_004072_010 Hb_005941_010 Hb_005941_010 Hb_004242_100--Hb_005941_010 Hb_005245_090 Hb_005245_090 Hb_004242_100--Hb_005245_090 Hb_003050_040 Hb_003050_040 Hb_004242_100--Hb_003050_040 Hb_002263_010 Hb_002263_010 Hb_004242_100--Hb_002263_010 Hb_000705_260 Hb_000705_260 Hb_004242_100--Hb_000705_260 Hb_000700_090 Hb_000700_090 Hb_004072_010--Hb_000700_090 Hb_006816_360 Hb_006816_360 Hb_004072_010--Hb_006816_360 Hb_004072_010--Hb_005245_090 Hb_098709_010 Hb_098709_010 Hb_004072_010--Hb_098709_010 Hb_004072_010--Hb_005941_010 Hb_000152_140 Hb_000152_140 Hb_005941_010--Hb_000152_140 Hb_005941_010--Hb_005245_090 Hb_005941_010--Hb_003050_040 Hb_000696_110 Hb_000696_110 Hb_005941_010--Hb_000696_110 Hb_000984_190 Hb_000984_190 Hb_005941_010--Hb_000984_190 Hb_000771_140 Hb_000771_140 Hb_005245_090--Hb_000771_140 Hb_005245_090--Hb_098709_010 Hb_026048_090 Hb_026048_090 Hb_005245_090--Hb_026048_090 Hb_009510_030 Hb_009510_030 Hb_005245_090--Hb_009510_030 Hb_033491_010 Hb_033491_010 Hb_003050_040--Hb_033491_010 Hb_003352_050 Hb_003352_050 Hb_003050_040--Hb_003352_050 Hb_003050_040--Hb_005245_090 Hb_002942_030 Hb_002942_030 Hb_003050_040--Hb_002942_030 Hb_006452_030 Hb_006452_030 Hb_002263_010--Hb_006452_030 Hb_030312_040 Hb_030312_040 Hb_002263_010--Hb_030312_040 Hb_003086_020 Hb_003086_020 Hb_002263_010--Hb_003086_020 Hb_002263_010--Hb_000152_140 Hb_001454_140 Hb_001454_140 Hb_002263_010--Hb_001454_140 Hb_009558_020 Hb_009558_020 Hb_000705_260--Hb_009558_020 Hb_000705_260--Hb_000984_190 Hb_001329_230 Hb_001329_230 Hb_000705_260--Hb_001329_230 Hb_003602_040 Hb_003602_040 Hb_000705_260--Hb_003602_040 Hb_006788_070 Hb_006788_070 Hb_000705_260--Hb_006788_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
96.1661 16.3403 3.38618 9.84188 81.7013 165.368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
151.41 59.5821 72.5708 38.2883 6.39793

CAGE analysis